PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA23191
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 467aa    MW: 52156.8 Da    PI: 7.1718
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA23191genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.4e-10112156554
                                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                h ++Er+RR+++ ++f  L  l+P++     kK++K +iL+  ++Y+k L
  Tp57577_TGAC_v2_mRNA23191 112 HIMAERKRREKLSQSFIALAALVPNL-----KKMDKQSILTDSIKYVKVL 156
                                899***********************.....9**************9977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.853107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-15111165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.59E-11112161No hitNo description
SuperFamilySSF474591.83E-14112167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.2E-8112156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-11113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MAKRKSISLC SKEQQFSTPQ SVTMEEINNT PINSSFQSLI LSFDNPLNSP PTTNTPHIYG  60
FDPTLNETES LSPPQFGNKH VSTQIPKGSS KNENLEAKIS QNKRSRYHGN DHIMAERKRR  120
EKLSQSFIAL AALVPNLKKM DKQSILTDSI KYVKVLKQRL EEQNKTTNAD SVVVMSKQDL  180
CINNDNSSYD ESIGGAFDAN ESLLQVEARV SGNMGSLQER LLKISQKKQK CVKASGVGGS  240
SSSAVAEDDV IVVDQSKETR RPKNRASSVV EDPERVKRTR VDLEFGDKEV DKFILPACIG  300
NNGLLDRNIT VQISPASLKR KHTKLKNDFL NYKEKFKVHA SIILDNTKKE EEIKELRRSQ  360
ETWVEEKTKL EDFLKSYGSR TLDGEVSTVD RSDELAGLDR ATLIAKIHNL EGEMLNSAQE  420
SFDNAFSQVK CLNPKIELKT EGMSVFMVVD GDRLTLPVGQ DEAEDV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115120ERKRRE
2116121RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA23191
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3KYJ40.0A0A2K3KYJ4_TRIPR; Transcription factor bHLH25-like protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110691238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-24bHLH family protein