PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA23072 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 177aa MW: 20319.5 Da PI: 9.8248 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 65 | 2.1e-20 | 21 | 107 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 +f+ +Y+ke GF vrk++++k+ ++g i + +fvC keg+r+++ ++ ++++aetrt+C ++ ++++ d+k++++++++ Tp57577_TGAC_v2_mRNA23072 21 EFWAAYGKEKGFGVRKQYTNKR-KDGYIRSFRFVCCKEGHRTKNPTS-LLVKNPKAETRTDCPTRIALSRK-DEKFVIHEFVEA 101 69***************99887.8899*****************999.9999******************9.9*********** PP FAR1 85 HnHela 90 HnH l+ Tp57577_TGAC_v2_mRNA23072 102 HNHLLQ 107 ***885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.0E-16 | 21 | 106 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MTIVTTPSVG MKFDSVNEAW EFWAAYGKEK GFGVRKQYTN KRKDGYIRSF RFVCCKEGHR 60 TKNPTSLLVK NPKAETRTDC PTRIALSRKD EKFVIHEFVE AHNHLLQLPE TTHMLASHRK 120 ISEVQAYEIE MAEDSRLMQK ASFQLMSAHV GGRDNLGYTR LDAKNXXXXX XXXXXX* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA23072 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024632639.1 | 1e-67 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2Z6N136 | 3e-94 | A0A2Z6N136_TRISU; Uncharacterized protein | ||||
STRING | XP_004506622.1 | 3e-64 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3045 | 14 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-17 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA23072 |