PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA2303
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 774aa    MW: 85310.3 Da    PI: 4.5354
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA2303genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.54.1e-10616659146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               rg+W+t + e++++a++q+G++ ++ I + ++  +t+ q+k+++ k
  Tp57577_TGAC_v2_mRNA2303 616 RGKWSTGDTEKFYEAIRQFGTD-FTMIQQLFP-DKTRHQIKLKYKK 659
                               89********************.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159636.0E-27609693No hitNo description
Gene3DG3DSA:1.10.10.608.6E-6611659IPR009057Homeodomain-like
PROSITE profilePS512939.208614662IPR017884SANT domain
SMARTSM007171.9E-7615663IPR001005SANT/Myb domain
SuperFamilySSF466897.18E-10617665IPR009057Homeodomain-like
CDDcd001671.38E-5618659No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 774 aa     Download sequence    Send to blast
MDDFFDDIDT IVPTTRAKTG SRFAPKAKPK PKQSIQKNVS ASSENAVSSK DGNNVLVDSS  60
TTLKESEGIS QNESHIVVAV SSSIEEPIRS DHNPDVNNVT AKPVQPANAV ESVLNSVAAP  120
STNCPTIGKN KELSVNGEGS FLDINKSLEV SLNEGPFLDS NIHSNFESGE LPQVLCSEFE  180
FDPFSNVLPD PGTRNAKKFQ PKIKPRPRVS NTPATASASS GMPFSEDNTS LETVIPSHPD  240
SLNAMTSETI VHDGTRDLPS SFGKSAAETA DIFSGLESLD DILNQAATGT GKPDLKSFNG  300
KGAEEDFVLP GYSRTETQEG TDLNADCPID NVYDYQSMKS GTDPTSEIPR HEVLTNSADS  360
PTLADLMQQD GTGEKEDANK RKKSGKKNKR SSIAGVEDKG GKTSRKPRKQ SVRKPAKNSL  420
NEPIEDNDDV LDPPYEFDGD ELEENDDENE VDNSSKKKRA STSSKKKSVA KNGKTSGKRK  480
KANDDLDKVT EKPPKKFPHS SRRKKRCVDK ALLDDEYLDQ RTLPLRDIIL LAEHKERLAK  540
KEGTTTNTSS ANQSDGDFLH ETDVNNEEEF YGSDDGYRDP YDGYKDPYDG QYQASENITS  600
TAPLLNYQSF MEKTPRGKWS TGDTEKFYEA IRQFGTDFTM IQQLFPDKTR HQIKLKYKKE  660
ERQHPLLLSD AVNNPTKDLS LFKLVIERQI QKSKEEQDAA GDASDLMPGE EVEEPTTPGT  720
NEEVAKPQQE QDHINVKDQE DSMPVPGQSD DDDDDDDDGE DPLLKWSQYQ SSI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1464480KKKSVAKNGKTSGKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA2303
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1674041e-115AC167404.11 Medicago truncatula clone mth2-9d11, complete sequence.
GenBankAC2024851e-115AC202485.8 Medicago truncatula clone mth2-176b2, complete sequence.
GenBankAC2035411e-115AC203541.4 Medicago truncatula clone mth2-20k1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024629483.10.0transcription factor TFIIIB component B'' isoform X3
TrEMBLA0A2Z6LP530.0A0A2Z6LP53_TRISU; Uncharacterized protein (Fragment)
STRINGAET045800.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36662938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.13e-40MYB_related family protein