PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA22778
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 298aa    MW: 34893.7 Da    PI: 7.7751
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA22778genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.45.7e-1758103148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                rg+ T++Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
  Tp57577_TGAC_v2_mRNA22778  58 RGNITPDEDDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 103
                                7999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.1462252IPR017877Myb-like domain
SuperFamilySSF466892.79E-2039109IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-113964IPR009057Homeodomain-like
PROSITE profilePS5129426.26453107IPR017930Myb domain
SMARTSM007176.5E-1657105IPR001005SANT/Myb domain
PfamPF002491.9E-1558103IPR001005SANT/Myb domain
CDDcd001679.00E-1262103No hitNo description
Gene3DG3DSA:1.10.10.609.9E-2365103IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
RISRNRNTCN RIHDRNRNLK PWKILNNNYV LDLNAGLLRC GKSCRLRWMN YLRPDIKRGN  60
ITPDEDDLII RLHSLLGNRW SLIAGRLPGR TDNEIKNYWN THLLKKMQRN QQTCDVLSDH  120
DDEQQQQQSK KKKRNNTNNK RKKKNEKKKG GKNDNNEEEE KIKVYLPKPI RIKALNLPRT  180
DSGNSFTFES NSSFGSQEKE RTEQQVRNDN VVCELVGEMG ENDGFGFSRD DYDLVNDYTL  240
ENAHESYFDT CDGGDHGTLE RLYDEYLQIL NMEDCNYPFD SSFAQSFFDT NNDIINI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-193910740108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129142KKKKRNNTNNKRKK
2129143KKKKRNNTNNKRKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA22778
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444592.11e-121myb-related protein 308
TrEMBLA0A072TMG71e-120A0A072TMG7_MEDTR; Myb transcription factor
STRINGXP_004510651.11e-109(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.17e-42myb domain protein 5