PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA22725

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 804aa MW: 93121 Da PI: 8.4474

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA22725	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	48.2	3.6e-15	36	121	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 ++Y +YA+ +GF rk +sk+ ++g t+ Cs+ k +++k+ ++++ t+t+Cka+l+v ++ +g+ ++++ le Tp57577_TGAC_v2_mRNA22725 36 DYYMNYARCIGFGFRKISSKNG-DDG-KRYFTLGCSRARKYVSNSKN---LLKPNPITKTQCKARLNVCMSLEGTVTISSVILE 114 59************998887.444.68899****9999988...999*************************** PP FAR1 85 HnHelap 91 HnHel+p Tp57577_TGAC_v2_mRNA22725 115 HNHELSP 121 ***86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-12	36	121	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.8E-39	241	335	IPR018289	MULE transposase domain
Pfam	PF04434	1.6E-6	526	558	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.385	526	562	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.0E-5	537	564	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 804 aa Download sequence Send to blast
VKEVKKNDDI LDKKLPYDGE NPWAGMTFSS EDEATDYYMN YARCIGFGFR KISSKNGDDG 60 KRYFTLGCSR ARKYVSNSKN LLKPNPITKT QCKARLNVCM SLEGTVTISS VILEHNHELS 120 PTKARYFRCN KNLGPYMKRR LELNDQAGIN VSRNFRSLVV EADGYENLSF GEKDCRNYID 180 KVRRLRLGTG DADAIQNYFV RMQKQNSQFY YVMDLDDESR LQNVFWADAR SRAAYEYFGE 240 VITFDTTYLT NKYDMPFAPF VGVNHHGQSI LLGCALLSNE DTETFTWLFK TWLECMQGRA 300 PNAIITDQDR AMKNSIEVVF PKARHRWCLW HIMKKVPEKL GRHSDYESIK TLLHDIVYDS 360 WSKSDFVEKW EKMVGYYELQ DNEWLKGLFH ERNRWVPVYV RDTFWAGMST TQRSESMNSF 420 FDGYVNSKTT LKQFVEQYDN ALKDKIEKEN LADFNSFNAT IACVSHFGFE SQFQNAFTNA 480 KFKEFQAEVA SLMYCHTLFE RSEGLISIFS VTENKKVFNK TQDIVFKVFL NEKDFELQCT 540 CCLFEFKGIL CRHILCVLTL TGKAESVPPG YILSRWRKDI RRRHTLIKCG FDHSARNPGL 600 QRVNKACDAF YEVASTRINT EDDLSKVINW IERLKIELAC KNSSSKIVEK DGYVQNHMTG 660 ILDPLPTRCK GCPPSTRKTS KVDRIVKNKI ARKKTQKRTQ KSKTDQSQEE GLCTSRVQEI 720 ANEKYFRSQI IDGIGTQESI QHEQTYSQTS GIVDNLAPFN PNKEYTNEEN PDMQFDKVMV 780 LCFVAMSNFD IKSPIPLMHI ILL*

Sequence ? help Back to Top

Protein Sequence Length: 804 aa Download sequence Send to blast

VKEVKKNDDI LDKKLPYDGE NPWAGMTFSS EDEATDYYMN YARCIGFGFR KISSKNGDDG  60
KRYFTLGCSR ARKYVSNSKN LLKPNPITKT QCKARLNVCM SLEGTVTISS VILEHNHELS  120
PTKARYFRCN KNLGPYMKRR LELNDQAGIN VSRNFRSLVV EADGYENLSF GEKDCRNYID  180
KVRRLRLGTG DADAIQNYFV RMQKQNSQFY YVMDLDDESR LQNVFWADAR SRAAYEYFGE  240
VITFDTTYLT NKYDMPFAPF VGVNHHGQSI LLGCALLSNE DTETFTWLFK TWLECMQGRA  300
PNAIITDQDR AMKNSIEVVF PKARHRWCLW HIMKKVPEKL GRHSDYESIK TLLHDIVYDS  360
WSKSDFVEKW EKMVGYYELQ DNEWLKGLFH ERNRWVPVYV RDTFWAGMST TQRSESMNSF  420
FDGYVNSKTT LKQFVEQYDN ALKDKIEKEN LADFNSFNAT IACVSHFGFE SQFQNAFTNA  480
KFKEFQAEVA SLMYCHTLFE RSEGLISIFS VTENKKVFNK TQDIVFKVFL NEKDFELQCT  540
CCLFEFKGIL CRHILCVLTL TGKAESVPPG YILSRWRKDI RRRHTLIKCG FDHSARNPGL  600
QRVNKACDAF YEVASTRINT EDDLSKVINW IERLKIELAC KNSSSKIVEK DGYVQNHMTG  660
ILDPLPTRCK GCPPSTRKTS KVDRIVKNKI ARKKTQKRTQ KSKTDQSQEE GLCTSRVQEI  720
ANEKYFRSQI IDGIGTQESI QHEQTYSQTS GIVDNLAPFN PNKEYTNEEN PDMQFDKVMV  780
LCFVAMSNFD IKSPIPLMHI ILL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA22725

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024626806.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A2K3KY26	0.0	A0A2K3KY26_TRIPR; Protein FAR1-related sequence 6-like
STRING	XP_004496070.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-132	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA22725