PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA22702
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 166aa    MW: 19433.3 Da    PI: 8.6766
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA22702genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.73.4e-2256144289
                       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 
                                fYn YA++ GF  rksk+kk+  n+e ++++fvC+++g+re++ k+ + ++r+ ++ tr+gCkak +v+ ++ +++w + +++ 
  Tp57577_TGAC_v2_mRNA22702  56 FYNWYARMHGFCSRKSKKKKN-ANKEDVRQEFVCYRQGFREDRFKDnKIRQREAKPITRCGCKAKCVVSVNRiTQRWSIRSIND 138
                                ****************99998.7777899*************98884567788999**************************** PP

                       FAR1  84 eHnHel 89 
                                 HnH+ 
  Tp57577_TGAC_v2_mRNA22702 139 VHNHPA 144
                                ****85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-2056144IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
CFTIVQDLES ECAPINMIVN YSINGVQDMG GVDFKNMTTT DIMMYDFPNL EVAFTFYNWY  60
ARMHGFCSRK SKKKKNANKE DVRQEFVCYR QGFREDRFKD NKIRQREAKP ITRCGCKAKC  120
VVSVNRITQR WSIRSINDVH NHPAVKELFI GFLPGHRGMD DDDIIQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA22702
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3MPM31e-110A0A2K3MPM3_TRIPR; Protein FAR1-related sequence 5-like (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3613639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.19e-15FAR1-related sequence 10