PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA22702 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 166aa MW: 19433.3 Da PI: 8.6766 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 70.7 | 3.4e-22 | 56 | 144 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 fYn YA++ GF rksk+kk+ n+e ++++fvC+++g+re++ k+ + ++r+ ++ tr+gCkak +v+ ++ +++w + +++ Tp57577_TGAC_v2_mRNA22702 56 FYNWYARMHGFCSRKSKKKKN-ANKEDVRQEFVCYRQGFREDRFKDnKIRQREAKPITRCGCKAKCVVSVNRiTQRWSIRSIND 138 ****************99998.7777899*************98884567788999**************************** PP FAR1 84 eHnHel 89 HnH+ Tp57577_TGAC_v2_mRNA22702 139 VHNHPA 144 ****85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.5E-20 | 56 | 144 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
CFTIVQDLES ECAPINMIVN YSINGVQDMG GVDFKNMTTT DIMMYDFPNL EVAFTFYNWY 60 ARMHGFCSRK SKKKKNANKE DVRQEFVCYR QGFREDRFKD NKIRQREAKP ITRCGCKAKC 120 VVSVNRITQR WSIRSINDVH NHPAVKELFI GFLPGHRGMD DDDIIQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA22702 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3MPM3 | 1e-110 | A0A2K3MPM3_TRIPR; Protein FAR1-related sequence 5-like (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3613 | 6 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 9e-15 | FAR1-related sequence 10 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA22702 |