PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA22606 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB_related | ||||||||
Protein Properties | Length: 256aa MW: 28160.8 Da PI: 10.8824 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.3 | 1.1e-10 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G g W+tI R+ ++k++w++ Tp57577_TGAC_v2_mRNA22606 5 KQKWTAEEEAALKAGVVKYGAGKWRTILTDPDfstilRMRSNVDLKDKWRN 55 79***********************************9***********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.823 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.68E-15 | 2 | 67 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.6E-5 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-12 | 5 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.6E-7 | 5 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 7.93E-19 | 6 | 57 | No hit | No description |
SuperFamily | SSF46785 | 2.23E-15 | 115 | 195 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00526 | 2.5E-12 | 115 | 180 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 24.443 | 117 | 185 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 3.7E-14 | 119 | 189 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 5.6E-9 | 122 | 177 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0070491 | Molecular Function | repressing transcription factor binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MGAPKQKWTA EEEAALKAGV VKYGAGKWRT ILTDPDFSTI LRMRSNVDLK DKWRNINVTA 60 IWGSRQKAKL ALKKNLPPPK TENNNHTTST AIVQYNPEVA APKPLAVSGG ISTSKEQISR 120 LDNLILESIV KLKEPKGSDM AAIAAYIEDQ YRSPPNLMKL LSTKLKHMVA GGKLVKANHK 180 YRIATNSTKT SEKRKSSSFC GILFKRIHPL ALPTSSPFIP RTTTGESTCN SILLKLCRRA 240 KHSPSFTPTA PPHKH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00626 | PBM | Transfer from PK06103.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA22606 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF468477 | 0.0 | EF468477.1 Medicago truncatula MYB transcription factor MYB25 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013453466.1 | 1e-130 | telomere repeat-binding factor 2 isoform X2 | ||||
Swissprot | Q8VWK4 | 1e-63 | TRB1_ARATH; Telomere repeat-binding factor 1 | ||||
TrEMBL | A0A2Z6NA73 | 1e-139 | A0A2Z6NA73_TRISU; Uncharacterized protein | ||||
STRING | AES94520 | 1e-129 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1453 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 1e-57 | telomere repeat binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA22606 |
Publications ? help Back to Top | |||
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