PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA22546
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 765aa    MW: 88246.3 Da    PI: 7.3868
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA22546genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.51.4e-2067165190
                       FAR1   1 kfYneYAkevGFsvrkskskks......krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgk 75 
                                +fY+ +A++ GFs+r+++ ++s      ++   ++kr+fvC + g  +++k ++++++r+r++++++C ak+ v k++   ++k
  Tp57577_TGAC_v2_mRNA22546  67 DFYSLFARKNGFSIRRDHVYRSciheseHNPMGVYKREFVCHRGGIVKQRKINEVESKRKRKSSKCNCMAKMLVAKRTidlEEK 150
                                6*********************998876555679******************************************999999** PP

                       FAR1  76 wevtkleleHnHela 90 
                                w++t +++ HnH+l 
  Tp57577_TGAC_v2_mRNA22546 151 WVITYFNNYHNHDLL 165
                                ************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.0E-1867165IPR004330FAR1 DNA binding domain
PfamPF105511.4E-27287380IPR018289MULE transposase domain
PROSITE profilePS509669.965552600IPR007527Zinc finger, SWIM-type
PfamPF044342.4E-8572599IPR007527Zinc finger, SWIM-type
SMARTSM005754.0E-6575602IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 765 aa     Download sequence    Send to blast
MTSEENNDAS DWHLEALKDY TSIYADEHVS SLPFHEPQYE LFPQVHNIDE LVPFEGQIFN  60
SDDDAYDFYS LFARKNGFSI RRDHVYRSCI HESEHNPMGV YKREFVCHRG GIVKQRKINE  120
VESKRKRKSS KCNCMAKMLV AKRTIDLEEK WVITYFNNYH NHDLLDDKEV QFLPAYRNIP  180
IADQSRILLL SKAGCAISLI TRVLELEKGI DTGSLPFLDK DIRNFIQSQS SIGKENDASD  240
VLKLCKSLKD IDDDFKYEFT IDENNKLEHI IWAFGDSIRA YETFGDVVVF DTTYRINRYD  300
MPLGLWVGVD NHGNSIFFGC VLLRDEKIPS FTWALKNFLA FVQGKYPKTI LTDQDLALKE  360
AIAMELPNTK HAFCIWHIVS KLSSWFSFAL GSRYNDFKQE FHRVYHLGCG EDFEREWQVM  420
VAEFGLLLDR HIELLFSHRK FWALAYLKDF FFAGMTTTGR SESINAYIKR FLDAKTSLTD  480
FVNQVGVAVK IRNQAGEEAR MRQKYHNPHI RTCFPIEEHA ASVLTPYAFD LLQHEIELST  540
KYAATEIDNS SYIVKHHTKD DGGRLVSWIV EKESIHCSCK EFQFSGILCR HAIRVLTLKN  600
YFSLPSKYLP FRWRRESSLI PKSSHVVNCN GGSSAEFQSL IRCLEVESSK TKEREQIAIR  660
ELEKVVKEIK NMPESEEHVI DLQPDDANND GCDVENPVVT KSKGRPKGSR SRPKGGVEGA  720
KKPRYCHVPG CNQTDHDTRN CPNKKKNIKV LPSQSPNKII KGWK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA22546
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506527.10.0protein FAR1-RELATED SEQUENCE 11-like
TrEMBLA0A396JX520.0A0A396JX52_MEDTR; Putative transcription factor FAR family
STRINGAES987360.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11