PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA22490
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 297aa    MW: 32961 Da    PI: 8.1637
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA22490genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260112.52.8e-3523110187
                     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                                +C aCk+lrrkC+k+C++apyf ++q + +fa+vhk+FGasn +kll ++p ++r da+ +l+yeA arardPvyG+v++i++l
  Tp57577_TGAC_v2_mRNA22490  23 PCGACKFLRRKCVKGCIFAPYFDSDQgTVHFAAVHKVFGASNASKLLMRIPVHKRLDAVVTLCYEALARARDPVYGCVAHIFAL 106
                                7***********************9988******************************************************** PP

                     DUF260  84 qqql 87 
                                qqq+
  Tp57577_TGAC_v2_mRNA22490 107 QQQV 110
                                **98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.11822125IPR004883Lateral organ boundaries, LOB
PfamPF031959.5E-3523110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MNYFGGKIGG GSDQIRGNGV GGPCGACKFL RRKCVKGCIF APYFDSDQGT VHFAAVHKVF  60
GASNASKLLM RIPVHKRLDA VVTLCYEALA RARDPVYGCV AHIFALQQQV LHFLFIFIYI  120
IKLQFFLLIF FFSYKYVKNR DLLLSCQVIV VICLNNLMRD TIGNLCHISL NNLSSLIQSL  180
NIEVMSLQAE LTYVQATLAT MQRLPISLAP SLPNPQSTSQ SLHSSSDHLG TNADLQSASN  240
MSMNFDPHQQ LSTSLDLSSF FNHSDQQLED DELQALAREF VSRYLPGVRF QPSNSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3419110797LOB family transfactor Ramosa2.1
5ly0_B1e-3419110797LOB family transfactor Ramosa2.1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1410GGKIGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA22490
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0525561e-130BT052556.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-F-13 unknown mRNA.
GenBankBT1490771e-130BT149077.1 Medicago truncatula clone JCVI-FLMt-11C11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013445017.12e-65LOB domain-containing protein 19
SwissprotO813221e-50LBD31_ARATH; LOB domain-containing protein 31
STRINGXP_004510943.11e-61(Cicer arietinum)
STRINGXP_007134896.11e-61(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.11e-51LOB domain-containing protein 31