PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA22470

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bHLH

Protein Properties

Length: 398aa MW: 44368.8 Da PI: 7.0915

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA22470	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.5	1.8e-11	334	378	6	54
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++Er RR ri ++ +L++l P++ +k s a++L +Av+YIk+L Tp57577_TGAC_v2_mRNA22470 334 SIAERERRIRISARIKKLQDLFPNS----DKQTSTADMLDEAVQYIKDL 378 689*******************9....788*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.513	328	378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-13	331	390	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.30E-11	332	383	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.4E-13	333	389	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-8	334	378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.9E-11	334	384	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MSIVYTQALD YSDSGSSLNS EMDSKFGYSQ TQQHCHQNNS GLSRYNSAPS SSLLTSLVDT 60 TIGNFFNDET FTNDNKHQSQ HYSSSTSSEM ETILTNSEPL YEFKPMKEEE NDPFSNGLLQ 120 YNGYSYGSQN QIIYQTQQNQ GLANGFDGSF SAMSSLDSSN NCSNLIRQKS SPAEFFSNYS 180 INNGSVSGQA ITSTSGLHGT LNFSSRSSSS SIKMPLIIEN EHENLQANVI KSRNIDNGIT 240 KCYMPSFTND YNWDSSTFSA PKNATNNGEF MFSTSNALET QDVDFRYQKH GLSHHLSLPS 300 SSSKMTTMEK YLHLQGSVPC KIRAKRGFAT HPRSIAERER RIRISARIKK LQDLFPNSDK 360 QTSTADMLDE AVQYIKDLRK QLKKLTDTKA KCTCTSN*

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MSIVYTQALD YSDSGSSLNS EMDSKFGYSQ TQQHCHQNNS GLSRYNSAPS SSLLTSLVDT  60
TIGNFFNDET FTNDNKHQSQ HYSSSTSSEM ETILTNSEPL YEFKPMKEEE NDPFSNGLLQ  120
YNGYSYGSQN QIIYQTQQNQ GLANGFDGSF SAMSSLDSSN NCSNLIRQKS SPAEFFSNYS  180
INNGSVSGQA ITSTSGLHGT LNFSSRSSSS SIKMPLIIEN EHENLQANVI KSRNIDNGIT  240
KCYMPSFTND YNWDSSTFSA PKNATNNGEF MFSTSNALET QDVDFRYQKH GLSHHLSLPS  300
SSSKMTTMEK YLHLQGSVPC KIRAKRGFAT HPRSIAERER RIRISARIKK LQDLFPNSDK  360
QTSTADMLDE AVQYIKDLRK QLKKLTDTKA KCTCTSN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA22470

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013445033.1	0.0	transcription factor bHLH130
Refseq	XP_024629575.1	0.0	transcription factor bHLH130
TrEMBL	A0A072TQD6	0.0	A0A072TQD6_MEDTR; Putative transcription factor bHLH family
STRING	XP_004510971.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4005	33	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	2e-27	bHLH family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA22470