PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA22210 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 143aa MW: 16480.6 Da PI: 9.8891 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 24.6 | 8.1e-08 | 23 | 76 | 47 | 90 |
FAR1 47 k.........tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 k + ++ ++r+e+r+gCka + +k+++ +++++++ e H H+l Tp57577_TGAC_v2_mRNA22210 23 KprsdspiviEFEKVKERPEERIGCKAGIYLKLDEtLNVYKIYRWEGTHCHQLH 76 0444456666678899******************9999**************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-4 | 33 | 76 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MVSMHNPNKE GFKKGSLLNP NNKPRSDSPI VIEFEKVKER PEERIGCKAG IYLKLDETLN 60 VYKIYRWEGT HCHQLHRKEH HRYLRSFREV NEVQGQLALI NSKAGMSMRT SYEVMGQGVG 120 GXXXXXXXXX XXXXXXXXXX XX* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA22210 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013441754.1 | 9e-66 | protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_024632961.1 | 4e-63 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | G7I8T1 | 9e-66 | G7I8T1_MEDTR; FAR1 DNA-binding domain protein | ||||
TrEMBL | Q2HW38 | 2e-65 | Q2HW38_MEDTR; Uncharacterized protein | ||||
STRING | AES61431 | 3e-66 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14214 | 2 | 15 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA22210 |