PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA22210
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 143aa    MW: 16480.6 Da    PI: 9.8891
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA22210genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR124.68.1e-0823764790
                       FAR1 47 k.........tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                               k         + ++ ++r+e+r+gCka + +k+++  +++++++ e  H H+l 
  Tp57577_TGAC_v2_mRNA22210 23 KprsdspiviEFEKVKERPEERIGCKAGIYLKLDEtLNVYKIYRWEGTHCHQLH 76
                               0444456666678899******************9999**************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-43376IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MVSMHNPNKE GFKKGSLLNP NNKPRSDSPI VIEFEKVKER PEERIGCKAG IYLKLDETLN  60
VYKIYRWEGT HCHQLHRKEH HRYLRSFREV NEVQGQLALI NSKAGMSMRT SYEVMGQGVG  120
GXXXXXXXXX XXXXXXXXXX XX*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA22210
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013441754.19e-66protein FAR1-RELATED SEQUENCE 5
RefseqXP_024632961.14e-63protein FAR1-RELATED SEQUENCE 5-like
TrEMBLG7I8T19e-66G7I8T1_MEDTR; FAR1 DNA-binding domain protein
TrEMBLQ2HW382e-65Q2HW38_MEDTR; Uncharacterized protein
STRINGAES614313e-66(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14214215