PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA2215 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | WRKY | ||||||||
Protein Properties | Length: 244aa MW: 27673.2 Da PI: 9.7156 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 82.9 | 3.1e-26 | 159 | 225 | 1 | 59 |
---SS-EEEEEEE--TT-SS-........EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefp........rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++p rsYYrCt+++C+vkk+ver aedp++v++tYeg+H h+ Tp57577_TGAC_v2_mRNA2215 159 LDDGYKWRKYGQKVVKNTQHPrynitiiqRSYYRCTQENCRVKKRVERLAEDPRMVITTYEGRHAHT 225 59******************94444444459***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.7E-30 | 143 | 225 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.109 | 154 | 227 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-24 | 154 | 225 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.8E-34 | 159 | 226 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.8E-20 | 160 | 224 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MSQIINNNLF EEQNQIPTQM GFIPFPTNLI TFPSLGCNNQ SLKALSSIAS SLTSESADST 60 SNLTQTLLSS ANLQKPSREY LTPSFGGTQF LSLHRSSVNP WAILGGVSDC LNDSSKRSGV 120 DHDHKLGVSS MKMKKMKGRK KVREPRFCFK TLSTDLDVLD DGYKWRKYGQ KVVKNTQHPR 180 YNITIIQRSY YRCTQENCRV KKRVERLAED PRMVITTYEG RHAHTPSNDD LHDSQTHSHD 240 FLW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-22 | 153 | 224 | 11 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 3e-22 | 153 | 224 | 11 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA2215 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003630131.2 | 1e-117 | probable WRKY transcription factor 13 | ||||
TrEMBL | A0A2K3NWH3 | 1e-146 | A0A2K3NWH3_TRIPR; WRKY transcription factor | ||||
STRING | GLYMA08G15210.1 | 1e-107 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4079 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39410.1 | 1e-43 | WRKY DNA-binding protein 13 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA2215 |