PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA22148
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ZF-HD
Protein Properties Length: 276aa    MW: 31339 Da    PI: 8.7073
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA22148genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer96.61.9e-3073128258
                ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                                +k+ Y+eCl+NhAas+G+h+vDGCgEfmps geeg+++++ CaAC+CHRnFHR++ +
  Tp57577_TGAC_v2_mRNA22148  73 TKTCYRECLRNHAASMGSHVVDGCGEFMPS-GEEGSPQSFVCAACNCHRNFHRKHFQ 128
                                5789*************************9.999********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.7E-2775126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.11877126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.2E-2777126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-1577122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.1E-27197268IPR009057Homeodomain-like
SuperFamilySSF466891.85E-18198267IPR009057Homeodomain-like
TIGRFAMsTIGR015652.2E-27206263IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
METNMSTTTL GYNKNSSSSS PPQQVHTLIF NNQTQISHNN LHPPITDPDL TVTTTIPPPP  60
PSEPPQQQQQ QQTKTCYREC LRNHAASMGS HVVDGCGEFM PSGEEGSPQS FVCAACNCHR  120
NFHRKHFQQL HQQHQQQTQN VHDVHNFHTP SSSSQRFSHA NSQQAIIVPP LMMNFGSGAA  180
ESSSEDLNIS GGEFSIQNQQ KKPALKKRIR TKFSQEQKDK MMEFGEKIGW KIQKHDEHEV  240
QQFCSQVGIK RQVFKVWMHN NKQAMKKQQQ QQQQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-232072621873ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00268DAPTransfer from AT2G18350Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA22148
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003612025.21e-110zinc-finger homeodomain protein 6
SwissprotQ9ZPW75e-60ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLA0A2K3JMV21e-154A0A2K3JMV2_TRIPR; ZF-HD homeobox-like protein
STRINGAES949831e-107(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.11e-52homeobox protein 24