PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA22030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 216aa MW: 25309 Da PI: 9.7181 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.2 | 6e-30 | 30 | 80 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +rienk+nrqvtfskRr g+lKKA+EL+vLCdaeva+iifss+gkl+ yss Tp57577_TGAC_v2_mRNA22030 30 ERIENKINRQVTFSKRRSGLLKKAFELCVLCDAEVALIIFSSRGKLFQYSS 80 69***********************************************96 PP | |||||||
2 | K-box | 22.9 | 3.5e-09 | 95 | 189 | 1 | 98 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 y k + ++l ++++++l+qe+ kLk+++e+L r+q + Le+qL+ l++ R+ + + l + eel++k Tp57577_TGAC_v2_mRNA22030 95 YSKLQAENLGHNDSQNLYQEYLKLKARYESLDRKQSEIXXXXXX---XXXXXXLEEQLDITLTQARQLQIKKLSARAEELREKV 175 66788899999***********************9999876655...5556789****************************** PP K-box 85 kelqeenkaLrkkl 98 ++l+e nk+L+ k+ Tp57577_TGAC_v2_mRNA22030 176 HNLEELNKTLEPKV 189 **********9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.964 | 22 | 82 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.8E-38 | 22 | 81 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.14E-32 | 23 | 101 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-29 | 24 | 44 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.13E-37 | 27 | 99 | No hit | No description |
Pfam | PF00319 | 2.0E-25 | 31 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-29 | 44 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-29 | 59 | 80 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 8.9E-6 | 104 | 188 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 7.434 | 108 | 196 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MKLSWSNIKG AKVARERERE RMGRGRVVLE RIENKINRQV TFSKRRSGLL KKAFELCVLC 60 DAEVALIIFS SRGKLFQYSS TDINKIIERY RQCRYSKLQA ENLGHNDSQN LYQEYLKLKA 120 RYESLDRKQS EIXXXXXXXX XXXXLEEQLD ITLTQARQLQ IKKLSARAEE LREKVHNLEE 180 LNKTLEPKVI DEFSNILADK TSHIQLEAIE ANHFE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 8e-24 | 22 | 92 | 1 | 71 | MEF2C |
5f28_B | 8e-24 | 22 | 92 | 1 | 71 | MEF2C |
5f28_C | 8e-24 | 22 | 92 | 1 | 71 | MEF2C |
5f28_D | 8e-24 | 22 | 92 | 1 | 71 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Regulates floral organ identity and floral meristem determinacy. May be involved in the control of flowering time. {ECO:0000269|PubMed:19820190, ECO:0000269|Ref.8}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA22030 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT137289 | 1e-123 | BT137289.1 Medicago truncatula clone JCVI-FLMt-16G17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004513659.1 | 3e-99 | truncated transcription factor CAULIFLOWER D-like isoform X1 | ||||
Swissprot | Q6EU39 | 9e-48 | MADS6_ORYSJ; MADS-box transcription factor 6 | ||||
TrEMBL | A0A1S2Z265 | 8e-98 | A0A1S2Z265_CICAR; truncated transcription factor CAULIFLOWER D-like isoform X1 | ||||
STRING | XP_004513659.1 | 1e-98 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13223 | 17 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15800.1 | 2e-41 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA22030 |