PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA21992
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 449aa    MW: 49511 Da    PI: 5.1948
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA21992genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS379.25.2e-116804393374
                       GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                                 lLl+cAe+v+ ++l  a+ lL ++ el+sp g++ +R+ ayf++AL+ar+++s+ + y+ l++++ + ++s++ ++a++ ++ 
  Tp57577_TGAC_v2_mRNA21992  80 GLLLQCAECVAMDNLDFANDLLPEITELSSPFGTSPERVGAYFAQALQARVVSSCLGSYSPLTAKSVTLTQSQRIFNAFQSYNS 163
                                58******************************************************************99************** PP

                       GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170
                                vsP++kfsh+taNqaI +av+ge+r+HiiD+di+qGlQWp L++ LasR+++  s+RiTg+gs    s+e le+tg+rLa+fA+
  Tp57577_TGAC_v2_mRNA21992 164 VSPLVKFSHFTANQAIFQAVDGEDRIHIIDLDIMQGLQWPGLFHILASRSKKIRSVRITGFGS----SSELLESTGRRLADFAS 243
                                ***************************************************************....9**************** PP

                       GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254
                                +lg+pfef+++  k  +  e+++L v+p+Ea++V++++  h l+d ++s       +L+l+ +l+Pk+++ veq+++h ++sFl
  Tp57577_TGAC_v2_mRNA21992 244 SLGLPFEFHPIEGKIGSVTEPSQLGVRPNEAIVVHWMH--HCLYDITGSDLG----TLRLLSQLRPKLITTVEQDLSH-AGSFL 320
                                **********877777888*****************99..777777777777....**********************.899** PP

                       GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                                +rf+eal+yysalfd+l  +l+ +s er++vE++llg ei+n++a  g +r+ + + +e+W + l+++GF+pv+l+ + a+qa+
  Tp57577_TGAC_v2_mRNA21992 321 ARFVEALHYYSALFDALGDGLGVDSVERHMVEQQLLGCEIRNIIAVGGPKRTGEVK-VERWGDELKRVGFRPVSLRGNPAAQAS 403
                                **************************************************998887.9************************** PP

                       GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                lll +++++gy++ ee+gsl lgWkd +L+ +SaW+
  Tp57577_TGAC_v2_mRNA21992 404 LLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAWQ 439
                                ***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.7652419IPR005202Transcription factor GRAS
PfamPF035141.8E-11380439IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MLQSLVPRPP LTSKPNNNNM NAKRAEREHD DDDSTLQEQP SFKRPNYSAE HTAAEAEEHE  60
EAQAFEPENE GESTGLKLLG LLLQCAECVA MDNLDFANDL LPEITELSSP FGTSPERVGA  120
YFAQALQARV VSSCLGSYSP LTAKSVTLTQ SQRIFNAFQS YNSVSPLVKF SHFTANQAIF  180
QAVDGEDRIH IIDLDIMQGL QWPGLFHILA SRSKKIRSVR ITGFGSSSEL LESTGRRLAD  240
FASSLGLPFE FHPIEGKIGS VTEPSQLGVR PNEAIVVHWM HHCLYDITGS DLGTLRLLSQ  300
LRPKLITTVE QDLSHAGSFL ARFVEALHYY SALFDALGDG LGVDSVERHM VEQQLLGCEI  360
RNIIAVGGPK RTGEVKVERW GDELKRVGFR PVSLRGNPAA QASLLLGMFP WRGYTLVEEN  420
GSLKLGWKDL SLLIASAWQP SDLMTYTD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1638444025380Protein SCARECROW
5b3h_A1e-1638444024379Protein SCARECROW
5b3h_D1e-1638444024379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA21992
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1372310.0BT137231.1 Medicago truncatula clone JCVI-FLMt-21B20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505671.10.0scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A2K3N0010.0A0A2K3N001_TRIPR; SCARECROW-like protein 23-like
STRINGXP_004505671.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]