PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA21892
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 424aa    MW: 48175.6 Da    PI: 8.4404
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA21892genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-18131177148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                +g WT+eEd +lv++vkq+G + W+ Ia+++  gR +kqc++rw+++l
  Tp57577_TGAC_v2_mRNA21892 131 KGQWTEEEDRKLVKLVKQHGVRKWSQIAEKLE-GRAGKQCRERWHNHL 177
                                799*****************************.*************97 PP
2Myb_DNA-binding46.77.2e-15183225145
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                +++W++eE+ +lv+ +   G++ W+ Ia++++ gRt++ +k++w+
  Tp57577_TGAC_v2_mRNA21892 183 KDSWSEEEERILVESHGTIGNR-WAEIAKKIP-GRTENAIKNHWN 225
                                679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129430.469126181IPR017930Myb domain
SuperFamilySSF466892.3E-30128224IPR009057Homeodomain-like
SMARTSM007173.6E-17130179IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-28132185IPR009057Homeodomain-like
CDDcd001674.61E-16134177No hitNo description
PfamPF139215.7E-20134191No hitNo description
SMARTSM007176.2E-15182230IPR001005SANT/Myb domain
PROSITE profilePS5129418.076182232IPR017930Myb domain
CDDcd001673.80E-11185228No hitNo description
Gene3DG3DSA:1.10.10.602.4E-19186230IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MKEVRVGGGD HIKITNHSSI GPHLSAIDRF LWGQQNHIPQ KKFQQSVDDQ NMCSFDYSNA  60
LPYSFMWPNN NMIMTQEASF VDHLLANEEV MNWSDQIPSL CVEKEDVVNG LGKGAKVGRK  120
PKKVPSFSLI KGQWTEEEDR KLVKLVKQHG VRKWSQIAEK LEGRAGKQCR ERWHNHLRPD  180
IKKDSWSEEE ERILVESHGT IGNRWAEIAK KIPGRTENAI KNHWNATKRR QNSRRKNKRP  240
QTTNGKPQSS ILQDYIKTLT QKPSTTTTTT TTTAASSSTS GISEDPSSNQ SNLVFSGLSH  300
ENSSSPLIDE SYDDELLFMQ QLFKANNNAE PVNPFYKKPS SNSYSLDYSP QTNSNNQILS  360
DVIDHAFVHS NSNSNYPMMN YLNSDHYFSP MLNGIHHNQS NVNYSDGKRE MDLLELVSSA  420
QFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C7e-451292312104C-Myb DNA-Binding Domain
1msf_C7e-451292312104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227238KRRQNSRRKNKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA21892
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013460199.10.0transcription factor MYB64
TrEMBLA0A072V7R50.0A0A072V7R5_MEDTR; Myb transcription factor
STRINGXP_004500264.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11050.19e-65myb domain protein 64