PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA21836 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | B3 | ||||||||
Protein Properties | Length: 249aa MW: 28664.1 Da PI: 9.3075 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38 | 2.9e-12 | 8 | 85 | 15 | 98 |
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + ++p +f++++g++ + +t+ ++g +We++l +k+++++++ +GW+eFv+ + g + Fk++g+s+f +v +f+ Tp57577_TGAC_v2_mRNA21836 8 MQRIPDEFITRFGNE--LKNVVTIIVPDGCVWEMEL--KKCDEHVFFCNGWQEFVEYYSIGYGCYLSFKYKGNSKF--RVIIFN 85 458******999855..66799999***********..**********************************9999..777776 PP | |||||||
2 | B3 | 37.7 | 3.6e-12 | 154 | 243 | 8 | 99 |
-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 8 sdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 s v k +++++p +fa ++ ++ ++ ++l++++g++ ev +i + +s+ + ++kG ++F + n+L gD +vF+l++++ Tp57577_TGAC_v2_mRNA21836 154 SKVAKGRCVYVPSDFAFKYlKL----NVPIKLQNSHGEQQEVFCILpDSRSSYMRISKGFSKFQRNNNLSPGDYCVFELIKKKP 233 567788889*******999644....456***************996666666889************************9999 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 l+v++fr+ Tp57577_TGAC_v2_mRNA21836 234 VVLKVTMFRA 243 9899999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.21 | 1 | 87 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.67E-19 | 2 | 86 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.6E-7 | 2 | 87 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.46E-12 | 5 | 85 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 5.0E-17 | 7 | 87 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.2E-9 | 8 | 85 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-12 | 145 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.02E-14 | 145 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.148 | 147 | 244 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0014 | 152 | 244 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.16E-11 | 154 | 242 | No hit | No description |
Pfam | PF02362 | 1.2E-10 | 154 | 243 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MTCHHLSMQR IPDEFITRFG NELKNVVTII VPDGCVWEME LKKCDEHVFF CNGWQEFVEY 60 YSIGYGCYLS FKYKGNSKFR VIIFNATSVE ICYPLKTPST NGEQNKKYSS PRKRSKVETS 120 ESHGKKVKIM SKDASKRAED AANVFNPNNP YFCSKVAKGR CVYVPSDFAF KYLKLNVPIK 180 LQNSHGEQQE VFCILPDSRS SYMRISKGFS KFQRNNNLSP GDYCVFELIK KKPVVLKVTM 240 FRAVDYCD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 2e-17 | 121 | 246 | 18 | 145 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 2e-17 | 121 | 246 | 18 | 145 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA21836 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024640216.1 | 1e-125 | B3 domain-containing transcription factor VRN1 isoform X2 | ||||
TrEMBL | A0A2K3L8A6 | 1e-178 | A0A2K3L8A6_TRIPR; B3 domain-containing protein | ||||
STRING | AES98603 | 1e-124 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14054 | 8 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-24 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA21836 |