PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA218
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family RAV
Protein Properties Length: 223aa    MW: 24647.6 Da    PI: 8.0692
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA218genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.12.5e-142472155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+++++g
  Tp57577_TGAC_v2_mRNA218 24 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDIAALRFRG 72
                             89****9888.8*********3.....5**********99*************98 PP
2B336.96.6e-12154223153
                              EEEE-..-HHHHTT-EE--HHH.HTT.................---..--SEEEEEETTS-EEEEEE..E CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.................ggkkeesktltledesgrsWevkliyr 53 
                              f+k+ tpsdv+k++rlv+pk++ae+h                 +   +++  l +ed  g++W+++++y+
  Tp57577_TGAC_v2_mRNA218 154 FEKTVTPSDVGKLNRLVIPKQHAEKHfplnavavavsgegispSVAAAKGLLLNFEDVGGKVWRFRYSYW 223
                              99***************************99999999986666333448899***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.79E-242478No hitNo description
PfamPF008474.3E-92472IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-162478IPR016177DNA-binding domain
PROSITE profilePS5103219.9022580IPR001471AP2/ERF domain
SMARTSM003803.3E-272586IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-202578IPR001471AP2/ERF domain
PRINTSPR003675.2E-52637IPR001471AP2/ERF domain
PRINTSPR003675.2E-54662IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.0E-19147223IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-12152223IPR015300DNA-binding pseudobarrel domain
CDDcd100175.91E-13153223No hitNo description
PfamPF023621.4E-9154223IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
ASVVVDPEIC GGSGEAESRK LPSSKYKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEDEAA  60
RAYDIAALRF RGKDAVTNSK TLTSVNNDTD EAEAEFLNSH SKSEIVDMLR KHTYDDELKQ  120
SMRDTCGGRQ RRNGELYGAA SRGACDAKAR EQLFEKTVTP SDVGKLNRLV IPKQHAEKHF  180
PLNAVAVAVS GEGISPSVAA AKGLLLNFED VGGKVWRFRY SYW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-271512231171DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA218
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591822.11e-145AP2/ERF and B3 domain-containing transcription factor RAV1
SwissprotQ9C6M53e-93RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A2K3LJ051e-164A0A2K3LJ05_TRIPR; Ap2/erf and B3 domain-containing transcription factor at1g50680-like protein
STRINGAES620731e-144(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-95RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]