PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA21529
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 264aa    MW: 30452.5 Da    PI: 6.7617
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA21529genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR147.27.5e-1553138191
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                                ++Y++YA+++GF v+k +sk+  ++g  +  t+ C++  k  +++k+     ++++ t+ +Cka+l+     dg+  +++++le
  Tp57577_TGAC_v2_mRNA21529  53 EYYKSYAQSIGFGVSKLSSKNG-DDG-KKYFTLACNRGTKYVSKSKN---LLKPNPITKSQCKARLNACIYLDGTVSISRIVLE 131
                                69**************998887.444.6889******9999998888...999****************999************ PP

                       FAR1  85 HnHelap 91 
                                HnH+l+p
  Tp57577_TGAC_v2_mRNA21529 132 HNHDLSP 138
                                ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-1253138IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
LDVLVEEVLV SPNEEEVNEE NDNCDKNLEA NMVYEDEKPQ VGMIFSYKDE LTEYYKSYAQ  60
SIGFGVSKLS SKNGDDGKKY FTLACNRGTK YVSKSKNLLK PNPITKSQCK ARLNACIYLD  120
GTVSISRIVL EHNHDLSPTK ARYFRSCKNL EPHLKKRLEL NDQAGINVSR NFRSLVVEAN  180
GYENLTFGEK XXXXXXXXXX XXXXXVRRLR LGRGDADAIQ NYFVKMQKQN SEFYYVIDID  240
DDGRLRNVFW ADARCRAAYE YFGE
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA21529
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024626806.11e-110protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A392M6P61e-117A0A392M6P6_9FABA; Protein FAR-RED IMPAIRED RESPONSE 1-like
STRINGXP_004496070.12e-93(Cicer arietinum)
STRINGAES884269e-95(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13793717
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.22e-20FAR1-related sequence 4