PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA21527
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 439aa    MW: 49729.5 Da    PI: 6.3816
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA21527genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B399.22.5e-31121212189
                                EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                                f+kv tpsdv+k++rlv+pk++ae++   ++++ +++ l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v 
  Tp57577_TGAC_v2_mRNA21527 121 FDKVVTPSDVGKLNRLVIPKQYAEKYfplDSSNDKGILLNFEDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVS 204
                                89***************************66777999*********************************************** PP

                                EEE-SSSE CS
                         B3  82 Fkldgrse 89 
                                F++ ++++
  Tp57577_TGAC_v2_mRNA21527 205 FHRGRHES 212
                                **654332 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.7E-41116230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-31118214IPR015300DNA-binding pseudobarrel domain
CDDcd100172.90E-28119212No hitNo description
PROSITE profilePS5086314.677121223IPR003340B3 DNA binding domain
SMARTSM010192.8E-25121225IPR003340B3 DNA binding domain
PfamPF023622.2E-28121221IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MEAEVKGYCS DSREEVEEEE EGAADEEIIP ITRGRGGQNS SSSSRLQFEL QTSQQLEEEE  60
EEEEEDGMKQ VEEVDMMELR LGGGKGRKNK EEGGSSNSKK VVEEEEEEAL PPVVVEKEHM  120
FDKVVTPSDV GKLNRLVIPK QYAEKYFPLD SSNDKGILLN FEDRNGKMWR FRYSYWNSSQ  180
SYVMTKGWSR FVKDKKLDAG DIVSFHRGRH ESYRHRLYID WRPRSHSQHP HHHHHLIPPQ  240
YPPPPPPNFY HHYSSSSPLY TSQYYPATTA IHPPPYPQYY NNNFYNTSST TLHHQQQQYH  300
HPSPAAAAEH FSNMNPLYYL PSSPITPMAT SGGSSGGLHQ HLQGHGQQQD QRNVNVPINM  360
IIDSVPVAHH HRGGNNNNNN TNSSGKRLRL FGVNMECEST SSASSAAPPQ HVAAATTSGG  420
TAVLFDLDPS NFQYRRQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-571142241113B3 domain-containing transcription factor NGA1
5os9_B2e-571142241113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA21527
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013450620.11e-130B3 domain-containing protein Os03g0120900 isoform X1
TrEMBLA0A2K3NZK90.0A0A2K3NZK9_TRIPR; B3 domain-containing transcription factor nga1-like protein
STRINGXP_004494886.18e-90(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.14e-57B3 family protein