PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA21288 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | bHLH | ||||||||
Protein Properties | Length: 141aa MW: 16246 Da PI: 5.7999 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20 | 1.2e-06 | 119 | 141 | 1 | 23 |
CHHHHHHHHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeL 23 +r++h ++Er+RR+++N+ ++ L Tp57577_TGAC_v2_mRNA21288 119 QRMTHIAVERNRRKQMNEYLAVL 141 79****************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.33E-5 | 110 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.00E-4 | 117 | 141 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.1E-5 | 117 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.496 | 118 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MTLEAVVFPQ DILCKDYLYS LVEIDTNKSE GSCSHNNYGC QTNEDLFGII NNNINQNIYA 60 NWDSSSPSMM QNGKDQSDSN SSLETSKLPQ FDVEATTTSR RRKRRRATSP KKEEEIESQR 120 MTHIAVERNR RKQMNEYLAV L |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 99 | 105 | RRRKRRR |
2 | 101 | 105 | RKRRR |
3 | 119 | 130 | RMTHIAVERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA21288 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003615193.2 | 3e-39 | transcription factor bHLH96 | ||||
TrEMBL | A0A2K3M416 | 9e-76 | A0A2K3M416_TRIPR; Transcription factor bHLH96-like protein | ||||
TrEMBL | A0A2K3N9N5 | 3e-74 | A0A2K3N9N5_TRIPR; Transcription factor bHLH96-like protein | ||||
STRING | GLYMA14G35560.1 | 5e-37 | (Glycine max) | ||||
STRING | AES98151 | 1e-36 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 6e-15 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA21288 |