PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA21215 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB_related | ||||||||
Protein Properties | Length: 126aa MW: 14064.1 Da PI: 11.0927 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.2 | 8.9e-14 | 51 | 90 | 1 | 40 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 r +WT eE++l++++ k G+g+Wk I+r+ k+Rt+ q+ Tp57577_TGAC_v2_mRNA21215 51 RSAWTDEEHKLFLKGLKHIGKGNWKEISRRYVKTRTPTQV 90 789**********************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.471 | 46 | 102 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-10 | 49 | 91 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.5E-9 | 50 | 91 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 7.7E-11 | 50 | 91 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-5 | 50 | 100 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-10 | 51 | 90 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.86E-9 | 53 | 90 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MLFGVKITIA TNNNNNLSQH QQTTAQVSIS TDASTVSDNV HASTGSSKYK RSAWTDEEHK 60 LFLKGLKHIG KGNWKEISRR YVKTRTPTQV AXXXXXXXXX XXXLFVIRTR IAAATGNLVS 120 LILQLI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA21215 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027187577.1 | 1e-23 | transcription factor MYB1R1 isoform X1 | ||||
TrEMBL | A0A2K3LW19 | 5e-25 | A0A2K3LW19_TRIPR; Transcription factor MYB 1R1-like protein | ||||
STRING | XP_004489944.1 | 4e-23 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3213 | 32 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G70000.2 | 2e-24 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA21215 |