PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp57577_TGAC_v2_mRNA21179 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 331aa MW: 37864 Da PI: 6.2918 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 67.7 | 1.9e-21 | 134 | 188 | 1 | 55 |
G2-like 1 kprlrWt.peLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rl W+ p+L e+F+++v+qL G++kAtPk+i +lm+v gLt ++v+SHLQk Rl Tp57577_TGAC_v2_mRNA21179 134 KNRLSWSdPKLKEQFLKVVNQL-GIDKATPKHITKLMNVRGLTQSQVASHLQKVRL 188 68****8689************.******************************997 PP | |||||||
2 | Response_reg | 39.4 | 3.3e-14 | 5 | 76 | 39 | 109 |
HHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 39 lkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109 l+e + +D+i++ +mp+md +e+l++ ++e k+pii+++ ++ + + + ++ Ga ++ +Kp + +++ + Tp57577_TGAC_v2_mRNA21179 5 LRETKgsFDVIVIEAQMPNMDSYEFLQRVTQEI-KIPIIMMGVDDTTNARMKSIEKGACEYWVKPLNVNHINN 76 5444455**********************9988.9*******************************9998765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 1.01E-14 | 1 | 84 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 2.5E-17 | 1 | 89 | No hit | No description |
CDD | cd00156 | 5.25E-10 | 1 | 74 | No hit | No description |
PROSITE profile | PS50110 | 24.663 | 1 | 82 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 3.4E-9 | 4 | 76 | IPR001789 | Signal transduction response regulator, receiver domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-21 | 132 | 190 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.51E-13 | 132 | 191 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.2E-19 | 134 | 188 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 331 aa Download sequence Send to blast |
AVHLLRETKG SFDVIVIEAQ MPNMDSYEFL QRVTQEIKIP IIMMGVDDTT NARMKSIEKG 60 ACEYWVKPLN VNHINNMWQH VVTIQDQDQI CRILEVKTGL KIMKRNHETA TKETNAYVLE 120 KYSDNDHDQP PTKKNRLSWS DPKLKEQFLK VVNQLGIDKA TPKHITKLMN VRGLTQSQVA 180 SHLQKVRLGL KGKSKKTKLK KELSKSGKHN QYHVPNNESL EVVQSMPMPM PEQNESVEVV 240 QSMPMPEQNE SVEVVQSMPA AEQDQNVVPN SANIQCDYNI PAQAQQHENV FDDFDISKLF 300 TNETNMMVDG SSYLYDEAWH SSEYGTFDWC * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA21179 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2Z6LGU9 | 1e-114 | A0A2Z6LGU9_TRISU; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G16110.1 | 5e-36 | response regulator 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Tp57577_TGAC_v2_mRNA21179 |