PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA21046 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB_related | ||||||||
Protein Properties | Length: 127aa MW: 14981.8 Da PI: 5.772 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.2 | 4.4e-19 | 3 | 44 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W++eE+++l++a+k+ G++ W+ Iar+++ gRt++ +k+rw++ Tp57577_TGAC_v2_mRNA21046 3 PWSEEEEKILIKAHKKVGNK-WTEIARMLP-GRTENAIKNRWNT 44 8*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.535 | 1 | 50 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-14 | 1 | 48 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-17 | 2 | 44 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.72E-16 | 2 | 53 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.45E-12 | 3 | 44 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-20 | 3 | 47 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
KAPWSEEEEK ILIKAHKKVG NKWTEIARML PGRTENAIKN RWNTAIRSHN RKNRKNRCNS 60 SKNTILWKYI NEINAKEVDE KENHEDLTTL EDEQPSGYEF ENGMEFFVEV PIKEEMDFME 120 MINNSP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1idy_A | 5e-17 | 1 | 47 | 5 | 51 | MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3 |
1idz_A | 5e-17 | 1 | 47 | 5 | 51 | MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 50 | 56 | RKNRKNR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA21046 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013456909.1 | 3e-28 | transcription factor MYB98 | ||||
TrEMBL | A0A2K3MH50 | 8e-61 | A0A2K3MH50_TRIPR; MYB protein | ||||
STRING | AES78630 | 4e-29 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1570 | 31 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 4e-16 | myb domain protein 98 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA21046 |