PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA20980
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 476aa    MW: 51255.8 Da    PI: 9.03
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA20980genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-056183123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               ++C++C+k F r  nL+ H r H
  Tp57577_TGAC_v2_mRNA20980 61 FVCEICNKGFQRDQNLQLHRRGH 83
                               89*******************88 PP
2zf-C2H211.40.001137159123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                +kC +C+k +  +s+ k H +++
  Tp57577_TGAC_v2_mRNA20980 137 WKCDKCSKKYAVQSDWKAHSKVC 159
                                58*****************9877 PP
3zf-C2H211.70.00078167185523
                                TTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                                dCg++Fsr++++ +H   +
  Tp57577_TGAC_v2_mRNA20980 167 DCGTVFSRRDSFITHRAFC 185
                                9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.49E-76083No hitNo description
Gene3DG3DSA:3.30.160.601.5E-56083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9496183IPR007087Zinc finger, C2H2
SMARTSM003550.0176183IPR015880Zinc finger, C2H2-like
PfamPF121717.5E-56183IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SMARTSM00355220102132IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.0E-4125158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.49E-7132157No hitNo description
SMARTSM00355150137157IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MVDLDNVSTA SGEASISSSG NNNNNQTPKP PKKKRNLPGM PDPEAEVIAL SPTTLLATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVRKR VYVCPESTCV HHDPSRALGD  120
LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKVCG SREYKCDCGT VFSRRDSFIT  180
HRAFCDALAE ENAKSQNQAV GKANSESDSK VLTGDSLPVA PTPAAITTPQ SNSGVSSALE  240
NQKLDLPENP PQIVEEPEAI VTTTITTAAA AAVLNANCSS SSSTSSTSNG CAATSSGVFA  300
SLFASSTALA SATMSATALL QKAAQMGAAA TNASLLRGLG IVSSSASTSS GQHDSLHWGL  360
GQVEPEGSGL GPAGLGLGLP CDGDSGLKEL MLGTPSMFGP KQTTLDFLGL GMAAGGSAGX  420
XXXXXXXXXX XXRRQWWFGC YRSNCILRQR RVFRQRYWKE FMIIWLQYQL LMFWL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-33133194364Zinc finger protein JACKDAW
5b3h_F3e-33133194364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00403DAPTransfer from AT3G50700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA20980
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1484840.0AC148484.17 Medicago truncatula chromosome 8 clone mth2-46g10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025653097.10.0zinc finger protein GAI-ASSOCIATED FACTOR 1 isoform X2
SwissprotQ9SCQ61e-160IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A151TI680.0A0A151TI68_CAJCA; Zinc finger protein MAGPIE
STRINGXP_010099839.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-104indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]