PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA20705

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bHLH

Protein Properties

Length: 335aa MW: 37104.3 Da PI: 7.2162

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA20705	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.7	3.2e-16	46	95	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+l+P++ ++K + a+ L +++eY+++Lq Tp57577_TGAC_v2_mRNA20705 46 RSKHSVTEQRRRSKINERFQILRDLIPQC----DQKRDTASFLLEVIEYVRYLQ 95 899***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.285	44	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.24E-19	45	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.0E-24	45	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-13	46	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.28E-14	46	99	No hit	No description
SMART	SM00353	7.4E-12	50	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MKAGKLNHDE DEYDDEDFNS SKKQGTSSAP NTNKDGKATD KASVIRSKHS VTEQRRRSKI 60 NERFQILRDL IPQCDQKRDT ASFLLEVIEY VRYLQEKVQK YEGSYQGWSQ EPSKLMPWRN 120 SHWRVQNFVG QPPVVKNGSG PVSPFPGKFD ESNVSISPTM LSGTQNMIDH DLSRDIIGKT 180 MERQPDLASK GIPLPMAMQS NMSVPVRSDG VLSHPLQGTV SDAQSIECPA TSEQLNQQDE 240 LTVEGGTISI SSVYSQGLLN NLTQALQSAG LDLSKANISV QIDLGKRANK EPGGTSSPKD 300 HDNPLSSNQS IAHFRDAIIR ENSDQAQKRM KTYK*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00219	DAP	Transfer from AT1G69010	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA20705

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT053019	0.0	BT053019.1 Medicago truncatula clone MTYFL_FM_FN_FO1G-B-11 unknown mRNA.
GenBank	BT133588	0.0	BT133588.1 Medicago truncatula clone JCVI-FLMt-12L3 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003614339.1	0.0	transcription factor BIM2
Swissprot	Q9CAA4	1e-115	BIM2_ARATH; Transcription factor BIM2
TrEMBL	G7JZB3	0.0	G7JZB3_MEDTR; Putative transcription factor bHLH family
STRING	AES97297	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1730	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-118	BES1-interacting Myc-like protein 2

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA20705

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]