PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA2065

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Dof

Protein Properties

Length: 445aa MW: 49774.8 Da PI: 7.7258

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA2065	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122	2.1e-38	157	216	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + lkcprC+s ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk+k+s+ Tp57577_TGAC_v2_mRNA2065 157 QPVLKCPRCESINTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRST 216 6679****************************************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-26	157	210	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-32	159	214	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.571	160	214	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	162	198	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MNVENLYLRL WKFAISMILM CIIIWMHSMC KERKLSDTTT SGISYLHHYK HDCLISVLDL 60 HLHGLNARFD EDNIKLLQCI SCLSPSSSIA EKIIENGDLS SHLSIPTTHP PFIPSFLHPQ 120 MQEIHSIGAG GTRFFGGGGA ADRRLRPNQN NNNNQTQPVL KCPRCESINT KFCYYNNYNL 180 SQPRHFCKNC RRYWTKGGVL RNVPVGGGCR KSKRSTKPKN SSSSSEISTL PMTPPENKSN 240 SHSSSESSSL TAAAVTETLS EQKPLNSNTK INNXXXXXXX XXXXXXXXXX XXXXXXXXXX 300 XXXXXXXXXX XXXQQHCLIT SSSNETLPFG FGNCNGNGNV NCLTDASSFQ WQNQKVMDQQ 360 NHHHHGDALK LLPENIGSGS LMDHSIDFSL LQSKTSNGGF GSLDWQGGAD QGLFDLPNTV 420 DQGYWNHTHW TDQDNDNSTL FHLP*

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MNVENLYLRL WKFAISMILM CIIIWMHSMC KERKLSDTTT SGISYLHHYK HDCLISVLDL  60
HLHGLNARFD EDNIKLLQCI SCLSPSSSIA EKIIENGDLS SHLSIPTTHP PFIPSFLHPQ  120
MQEIHSIGAG GTRFFGGGGA ADRRLRPNQN NNNNQTQPVL KCPRCESINT KFCYYNNYNL  180
SQPRHFCKNC RRYWTKGGVL RNVPVGGGCR KSKRSTKPKN SSSSSEISTL PMTPPENKSN  240
SHSSSESSSL TAAAVTETLS EQKPLNSNTK INNXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXXQQHCLIT SSSNETLPFG FGNCNGNGNV NCLTDASSFQ WQNQKVMDQQ  360
NHHHHGDALK LLPENIGSGS LMDHSIDFSL LQSKTSNGGF GSLDWQGGAD QGLFDLPNTV  420
DQGYWNHTHW TDQDNDNSTL FHLP*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00570	DAP	Transfer from AT5G60850	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA2065

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004508651.1	1e-100	dof zinc finger protein DOF5.4
TrEMBL	A0A2K3L897	1e-152	A0A2K3L897_TRIPR; Dof zinc finger protein
STRING	XP_004508651.1	1e-100	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5998	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	3e-31	OBF binding protein 4

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA2065