PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA20643
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 426aa    MW: 46480.1 Da    PI: 6.7991
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA20643genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.23.1e-32151207259
                                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers   ++v+ i+Y+geHnh+
  Tp57577_TGAC_v2_mRNA20643 151 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPSCPVKKKVERSL-AGHVTAIIYKGEHNHQ 207
                                8****************************************.9**************8 PP
2WRKY107.19e-34311369159
                                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++dpk+v++tYeg+Hnh+
  Tp57577_TGAC_v2_mRNA20643 311 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTQGCNVRKHVERASTDPKAVITTYEGKHNHD 369
                                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.2E-29136209IPR003657WRKY domain
SuperFamilySSF1182902.22E-25148209IPR003657WRKY domain
SMARTSM007746.9E-35150208IPR003657WRKY domain
PROSITE profilePS5081123.388151209IPR003657WRKY domain
PfamPF031069.1E-25151207IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-37297371IPR003657WRKY domain
SuperFamilySSF1182906.02E-30303371IPR003657WRKY domain
PROSITE profilePS5081139.18306371IPR003657WRKY domain
SMARTSM007741.1E-39311370IPR003657WRKY domain
PfamPF031062.6E-26312369IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MDRPPWNEEE QAVDGGEGGL PPRHSLTLPP HMDNLFSGGF SPGPMTLLSN LLTEGEDGKS  60
FSQLLAGAMA SPATGTAALL DSPGFFSHPQ VSFGMSHQQQ ALAQVSAQEQ SITNMNNQAG  120
HSMSVSASID HAPLSEQRQQ SSSLNVDKPA DDGYNWRKYG QKHVKGSEFP RSYYKCTHPS  180
CPVKKKVERS LAGHVTAIIY KGEHNHQRPS NKRSKDTITS NDSSNMQGNA DSSYQGMMDP  240
ESSQATGEHI SGTSDSEEIG DHGAEVDEKR VEPDPKRRNT EIVVSDPAAS SHRTVAESRI  300
IVQTTSEVDL LDDGYRWRKY GQKVVKGNPY PRSYYKCTTQ GCNVRKHVER ASTDPKAVIT  360
TYEGKHNHDV PAAKTNSHTI ANNNASQLRS QNNISEKPNF GSIDIGGGNE QQPVARLMLK  420
EERIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-43151372878Probable WRKY transcription factor 4
2lex_A4e-43151372878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA20643
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003613943.10.0probable WRKY transcription factor 4
SwissprotQ9XI901e-132WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A2K3NMQ40.0A0A2K3NMQ4_TRIPR; WRKY transcription factor
STRINGAES969010.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.21e-136WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]