PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA20602
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HB-other
Protein Properties Length: 1839aa    MW: 207667 Da    PI: 5.1777
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA20602genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.8e-1887142257
                                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                                 kR+  t+ qle+Le++++ ++yps+  r eL++klgLt+rq ++WF+ rR k+kk
  Tp57577_TGAC_v2_mRNA20602  87 PKRQMKTPFQLETLEKAYALDNYPSEPVRIELSEKLGLTDRQLQMWFCHRRLKDKK 142
                                69****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-1861143IPR009057Homeodomain-like
SuperFamilySSF466892.14E-1774143IPR009057Homeodomain-like
PROSITE profilePS5007116.87683143IPR001356Homeobox domain
SMARTSM003891.9E-1985147IPR001356Homeobox domain
PfamPF000464.5E-1687142IPR001356Homeobox domain
CDDcd000861.27E-1488144No hitNo description
PROSITE profilePS5082716.679590649IPR018501DDT domain
SMARTSM005711.0E-20590649IPR018501DDT domain
PfamPF027911.5E-16591646IPR018501DDT domain
PfamPF050663.6E-14772840IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156121.7E-89741018IPR028942WHIM1 domain
PfamPF156139.3E-1411441216IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1839 aa     Download sequence    Send to blast
LLKLKERIDS WTFSPITGFC EAETAKLRSL IDFLVMEGEA SSEGDSDRKR GGGGGGDDNS  60
DENNNNKNNN DGSNSKIAVS NEGQSKPKRQ MKTPFQLETL EKAYALDNYP SEPVRIELSE  120
KLGLTDRQLQ MWFCHRRLKD KKESAPKKAP PPRKTVVEPL PDSPVDDLRM GSEHGNGYGS  180
GSGSGSSPST RLEGRNAMPL SVGYYESPQV EMELRAIACV EDQLGEPLRE DGPILGVEFD  240
PLPPDAFGAH IEHQKRPRLT YDGKMYGRHD VRTNKAMSRT SHEYQYLPNQ SGNKSDAFGQ  300
FGQSHLHTPK EGPSRNSPLP RIHATKGHSS RVSLLSQQDK KGSPYLSPPR DDDVAPTQEV  360
YTNMANVGMN SHQTDCQTGG SENPYASPSG QILQNNATHN ERKRKGDDGK ITRDVEANEM  420
RIQKELEKQD NLRRKNEERI RKEMERQDRE RKKEEERLMR ERLREEERTK REEKREIERR  480
EKYLLRENLK AERMRQKEEL RKEKEAERRK AALEKAHARK IAKESMELIE DEQLEMMELA  540
ASSKGLSSII RLDFDTLQNI ESFRGSLCVF PPENVKLRKP FAIQPWINSE ENIGNLLMVW  600
RFLITFADVL ELWPFTLDEF VQAFHDYDSR LLGEIHVAIL KVIIKDIEDV ARTPVTGLGM  660
NQNGAANSGG GHPEIVEGAY AWGFDIRNWH KHLNQLTWPE IFRQLALSAG YGPQFKKRSI  720
TSSRANSKDE GRSCIDTISS LRNGSAAENA VAKMQERGLL GPRRSRHRLT PGTVKFAAFH  780
VLSLESGDGL NVIELAEKIQ KSGLRDLTTS KTPEASISVA LTRDAKLFER VAPSTYCVRA  840
AFRKDPADAE SILSEARKKI QIFENGFLAE EDADDGEREE SESEVDEDPE VDDLVNPSSV  900
IKTSDHCNDF SSSGKENLGH DAELKDEFDK DLPYPDNGSK SADCPRAVSG QPVACENLNA  960
RNLGEDNMEI DESKSGESWI QGLTEGEYSD LSVEERLNAL VVLVGVANEG NSIRVVLEDR  1020
LEAANALKKQ MLAEGQIDKI RLKDDNVIKS DFPKVETQLT CAAVEGNQSP LLDINNNEES  1080
PSKTENKRLA LVGQNLPEKL SSSQDLCIGP DNPQTVLSAQ YSKRSRSQLK SYISQLAEEM  1140
YIYRSLPLGQ DRRHNRYWQF VASASCNDPG SGRIFVEYHD GKWRLIDSVE AFDTLLSSLD  1200
SRGIRESHLR LMLLKIENIF KENVQKNAKC AKIGNTDEIR VKNEADETDS SPDNHTRSDS  1260
PSSTLCGLSS DTSETSSSFR IELGKSESDK KSALGRYQDF QKWMWKECYN PSILSAMKYG  1320
KKRCKPQVDI CDTCLDLYCL EDSHCSYCHR TFPSNDGFNF SKHAFECGDK LPKDICILDS  1380
SLPLRTRLLK AILAFIEVSV PPEAFQSIWT EDIRRLWGVK LHRSSSVEEL LQILTLFERA  1440
LKRDFLSSSF STTGDLLGMS TLLESAAHTS MDLESVPVLP WVPRTTSAVS LRLFEFDTSI  1500
AYVKLEKPEL YEEKEARYIK LPSRYASVKS TKVVEPADLE RDELMKVKSA PIVRSSKKRG  1560
RVNHDKGRTK KLSKRTNDSK QDNVHHNFIV TDNLSQRIKQ QGQGSQGQAG GRGPRTVRKR  1620
RAEKRVVEDY LLDDRAANHS FNIGREPSRI LDEDWNYEKT GPIHMEAADV SSSSEEVEYD  1680
DNAQAVESDD NVEAVEYGQG NWEIGFNVES DDNVEAVEYG QGNWEIGFNG TPNRWNRDLV  1740
GMSDEDAEAS EDDINNGIEE NEVEVEEEEE EEEGSEADVM SEGSDVVLQV MPWLQRFDRL  1800
CRIIVYIIHA EWILILLGFF KWRAKPNFPP FSCNRYSH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135142RRLKDKKE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA20602
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012572567.10.0LOW QUALITY PROTEIN: homeobox-DDT domain protein RLT1-like
SwissprotF4HY560.0RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBLA0A2K3NRB60.0A0A2K3NRB6_TRIPR; Homeobox protein HOX-C4
STRINGGLYMA07G32180.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25233369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.10.0homeobox-1