PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA20352 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 253aa MW: 28939.8 Da PI: 5.0163 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 34.2 | 3.3e-11 | 55 | 78 | 27 | 50 |
HHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 27 LSvLCdaevaviifsstgklyeys 50 LS+LCd+ev vi+fsstgklye+s Tp57577_TGAC_v2_mRNA20352 55 LSILCDVEVGVIVFSSTGKLYEFS 78 9**********************8 PP | |||||||
2 | K-box | 48.2 | 4.6e-17 | 102 | 187 | 14 | 99 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + + + a L++e+ +L++ ++ G++L+ L++keLq Le+qL +++ +++ kK+++l+eq+e+++ +e+++ e ++Lrk+ Tp57577_TGAC_v2_mRNA20352 102 PQVVELDTAILQEEMAKLRSAYVRMTGKELDGLQIKELQDLENQLSEAILSVKGKKEQVLVEQLEKSRLQEQMAMAEIEDLRKQ 185 5666677889************************************************************************99 PP K-box 98 le 99 + Tp57577_TGAC_v2_mRNA20352 186 EQ 187 75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 13.105 | 22 | 81 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-8 | 55 | 77 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-11 | 55 | 93 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 10.01 | 102 | 192 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 9.9E-12 | 107 | 185 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MFGVEEKKEI VKVEEKKKKK RMGSRDIEIE KTDNLIXXXX XXXXXXXXXX XXXXLSILCD 60 VEVGVIVFSS TGKLYEFSRP SMEHILSRYG AEQQQPNAQP PPQVVELDTA ILQEEMAKLR 120 SAYVRMTGKE LDGLQIKELQ DLENQLSEAI LSVKGKKEQV LVEQLEKSRL QEQMAMAEIE 180 DLRKQEQKAV VETETVCKQL RNCEEIENKK KSEAIADTSL RYVCNNSELA FHRPCFLQYP 240 GFMILAQCTP TT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA20352 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013467596.1 | 8e-59 | agamous-like MADS-box protein AGL18 | ||||
TrEMBL | A0A072VJL7 | 2e-57 | A0A072VJL7_MEDTR; MADS-box transcription factor | ||||
STRING | XP_004513865.1 | 2e-55 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3582 | 32 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13790.1 | 9e-32 | AGAMOUS-like 15 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA20352 |