PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA2030
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family TCP
Protein Properties Length: 299aa    MW: 33183.9 Da    PI: 9.3987
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA2030genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP94.32.4e-2957151389
                       TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 
                               g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WLl++ +  i++l+ ++++++ ++ ++++   +++n s
  Tp57577_TGAC_v2_mRNA2030  57 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLEATQSDIDKLPPLQNIPQCFTtQPQTLLHQQGNFS 141
                               78*************************************************************9999944444444444444333 PP

                       TCP  87 sg.......k 89 
                                g        
  Tp57577_TGAC_v2_mRNA2030 142 LGsgfydhqI 151
                               3344444330 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.8E-2758165IPR005333Transcription factor, TCP
PROSITE profilePS5136928.76758116IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MMIENCSSSG KGYNHESSNQ QEDENGTMKF SNKAIATSRQ WTSLRNPRIV RVSRSLGGKD  60
RHSKVCTIRG LRDRRIRLSV PTAIQLYDLQ DRLGLSQPSK VVDWLLEATQ SDIDKLPPLQ  120
NIPQCFTTQP QTLLHQQGNF SLGSGFYDHQ IKGKEAEISY NTNYSSNAFP YNLDYPSSTL  180
SLSQFGNNNN HGNLFGSSSG MKFSSGNSSQ LLFCPNSNSA MPSSLFSSSS TNLQQHAPSM  240
EISSDVQRQF TNVQILNSSS TSSFIPSLQL PINSPFRRLP MPFINSKVLD SDHNNTRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-1963117155Putative transcription factor PCF6
5zkt_B4e-1963117155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA2030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013458007.21e-108transcription factor TCP17 isoform X2
RefseqXP_024637615.11e-108transcription factor TCP17 isoform X1
TrEMBLA0A396IG221e-107A0A396IG22_MEDTR; Putative transcription factor TCP family
STRINGXP_004508663.16e-89(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-46TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5