PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA2020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 179aa MW: 21042.9 Da PI: 10.174 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 36 | 8.8e-12 | 11 | 49 | 4 | 42 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 n+s r++t+ kR++g+ K E+ +LC+++++ ii+s+ Tp57577_TGAC_v2_mRNA2020 11 VNESARKITYNKRKKGLNKSMAEITTLCGIDACAIIYSE 49 5999*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00266 | 2.53E-17 | 1 | 81 | No hit | No description |
SMART | SM00432 | 6.7E-12 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 13.049 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.03E-16 | 2 | 80 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.6E-13 | 12 | 49 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MKKKLKLAFM VNESARKITY NKRKKGLNKS MAEITTLCGI DACAIIYSEF HSEPEVWPFP 60 SEVQRIINKF KNHFEFEHGN KKKLSHETYL TRRVTKSKEQ LVKLEKNNLE MQKSLTLYXX 120 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXVFYGILF CYFVLSFVSI LRCNDKSL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA2020 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013460430.1 | 1e-51 | agamous-like MADS-box protein AGL80 | ||||
STRING | XP_004500453.1 | 5e-49 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16302 | 3 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 4e-28 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA2020 |