PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA20103
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family G2-like
Protein Properties Length: 407aa    MW: 45886.6 Da    PI: 9.0461
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA20103genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.84.2e-32223276255
                    G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Tp57577_TGAC_v2_mRNA20103 223 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 276
                                9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.15E-15220276IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-28221276IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-23223276IPR006447Myb domain, plants
PfamPF002492.7E-7224275IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNTK PTTTTNWKRT TTEEEMDLGF WKRALDSRNS LSSSRNDNSF  60
DLSLSNPTRS LDSHNNNNTS SNNLIHHNHF QNSVSNNHNA NNPFQSFQQN HYFQHPQPLF  120
QHHQLQNQQH QSLSQELGFL RPIRGIPVYQ NPPPLSFPQL HNHNHNLNHH HLNHVLDGST  180
TTNTTTPSSI SNTNTSSSPF QSQALMRSRF LSRFPAKRSM RAPRMRWTTT LHARFVHAVE  240
LLGGHERATP KSVLELMDVK DLTLAHVKSH LQMYRTVKTT DRVGATSGQS DVYDNGSSGD  300
NSDDIMFDIN SSRRSSDLSI KQQGRSSVNQ DKECYGLWSN SSREAWLHGK PKIDSIGNMQ  360
SLEKEMDPKC LSYERISDGS SSTNLSGSSP KKPNLDLEFT LGQPSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-17224278458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-17224278458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-17224278357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-17224278357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-17224278357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-17224278357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-17224278458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-17224278458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-17224278458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-17224278458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-17224278458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-17224278458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA20103
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1250380.0EF125038.1 Medicago truncatula MYB transcription factor MYB34 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003612825.10.0probable transcription factor KAN2
SwissprotQ9C6161e-96KAN2_ARATH; Probable transcription factor KAN2
TrEMBLD2CGQ00.0D2CGQ0_MEDTR; MYB transcription factor MYB34
STRINGAES957830.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59683452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.17e-67G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]