PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA20074

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 883aa MW: 99184.7 Da PI: 6.5417

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA20074	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47.8	4.9e-15	61	135	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 fY eYAk++GF ++ + ++sk ng+ + r+fvC +eg +++ ++ gC+a++k++++ ++kw+vtk+++eH Tp57577_TGAC_v2_mRNA20074 61 FYYEYAKHAGFISKVGSRSSSKANGQDMYREFVCEREGLNKRFND--------------GCNAMIKIELKGQNKWVVTKFVKEH 130 9************************************988543..............7******************** PP FAR1 86 nHela 90 +H+l+ Tp57577_TGAC_v2_mRNA20074 131 SHSLM 135 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-11	61	135	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.3E-25	276	368	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.239	554	590	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.6E-10	562	589	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.6E-8	565	592	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 883 aa Download sequence Send to blast
MDVHVINVEE ESDHQSADDR DTEPSDGEIN NAESSGFYVE EGISDPYLGM EFDSEDAAKA 60 FYYEYAKHAG FISKVGSRSS SKANGQDMYR EFVCEREGLN KRFNDGCNAM IKIELKGQNK 120 WVVTKFVKEH SHSLMSSSKS QKLHPRKHFS SVGRTMPETY QGIGLVPSGV MYVSMDGNHV 180 SNQNTSAVLN IHASTAVDPS TPVKNATSVN YTARPPSQNR TLGKDAHILL EYFKKMQGEN 240 PGFFYAIQLD EDNHMSNVFW ADARSRTAYS HFGDAIHLDT TCRVNQYSVP FAPFTGVNNH 300 GQLVLFGCAL LFDDSEASFL WLFKTFLSAM NERQPVSIIT DQDIVIQEAV SQVFPQARHC 360 INKWHVLREG QEKLAHVCLA HPNFQGELYN CINRTETIEE FESSWNSILD KYKLRRNDWL 420 QLLYNARAQW APAYFHDSFF AAISPNQGFG GSFFEGYINQ QMTLPFFFRQ YERALESWIE 480 KEIEADFETI CTTPVLKTPS PMEKQAANLY TRKIFLKFQD ELVETFVYTA NIIEGDDVNS 540 TFKVAKFEDV NKAYTVSFNH AELRANCSCQ MFEYSGILCR HILTVFTMTN VLTLPSHYIL 600 KRWTKNAKSS AGSDECTGEL HGQESLTLRY SNLCREAIRY AEEGAVTVET YNVAVTGLKE 660 GGKKVTAMKK SVAKATPPNS QASGTNNNKK TTTSSTLDST PLLWPRQDEI TGRFNLNDSG 720 GPVQSVADLN LPRMTPVSLH RDGGPSGNMV VLPCLKAMTW VMENKNSSLG SKVAVINLKL 780 QDNSRNPSTE FEVKFQLSRV TLEPMLKSMA SISEQLSKPA NKVAVINLNL QDVDTNFGES 840 EVRFQVSKDT LGAMLRSMAY IREQLSHVGD AHSEPLLKKH KK*

Sequence ? help Back to Top

Protein Sequence Length: 883 aa Download sequence Send to blast

MDVHVINVEE ESDHQSADDR DTEPSDGEIN NAESSGFYVE EGISDPYLGM EFDSEDAAKA  60
FYYEYAKHAG FISKVGSRSS SKANGQDMYR EFVCEREGLN KRFNDGCNAM IKIELKGQNK  120
WVVTKFVKEH SHSLMSSSKS QKLHPRKHFS SVGRTMPETY QGIGLVPSGV MYVSMDGNHV  180
SNQNTSAVLN IHASTAVDPS TPVKNATSVN YTARPPSQNR TLGKDAHILL EYFKKMQGEN  240
PGFFYAIQLD EDNHMSNVFW ADARSRTAYS HFGDAIHLDT TCRVNQYSVP FAPFTGVNNH  300
GQLVLFGCAL LFDDSEASFL WLFKTFLSAM NERQPVSIIT DQDIVIQEAV SQVFPQARHC  360
INKWHVLREG QEKLAHVCLA HPNFQGELYN CINRTETIEE FESSWNSILD KYKLRRNDWL  420
QLLYNARAQW APAYFHDSFF AAISPNQGFG GSFFEGYINQ QMTLPFFFRQ YERALESWIE  480
KEIEADFETI CTTPVLKTPS PMEKQAANLY TRKIFLKFQD ELVETFVYTA NIIEGDDVNS  540
TFKVAKFEDV NKAYTVSFNH AELRANCSCQ MFEYSGILCR HILTVFTMTN VLTLPSHYIL  600
KRWTKNAKSS AGSDECTGEL HGQESLTLRY SNLCREAIRY AEEGAVTVET YNVAVTGLKE  660
GGKKVTAMKK SVAKATPPNS QASGTNNNKK TTTSSTLDST PLLWPRQDEI TGRFNLNDSG  720
GPVQSVADLN LPRMTPVSLH RDGGPSGNMV VLPCLKAMTW VMENKNSSLG SKVAVINLKL  780
QDNSRNPSTE FEVKFQLSRV TLEPMLKSMA SISEQLSKPA NKVAVINLNL QDVDTNFGES  840
EVRFQVSKDT LGAMLRSMAY IREQLSHVGD AHSEPLLKKH KK*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA20074

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC146743	0.0	AC146743.11 Medicago truncatula clone mth2-12k22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004501994.1	0.0	protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_012571757.1	0.0	protein FAR1-RELATED SEQUENCE 3-like
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A2K3N9C2	0.0	A0A2K3N9C2_TRIPR; Protein FAR1-related sequence 3-like
STRING	XP_004501994.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA20074

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]