PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA20048 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 146aa MW: 16938.2 Da PI: 8.7546 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 72 | 1.4e-22 | 21 | 109 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklel 83 kf+ +Y+ ++GF vrk++++ s + +g t+ +fvC keg r+++k++ k+ ++r+etrt+C a++ +k++ ++w+v++++ Tp57577_TGAC_v2_mRNA20048 21 KFWVDYGGRMGFGVRKQYKHISkDGSGLATSCRFVCCKEGLRKPDKRD-FKTIKPRPETRTNCPARIGLKNM-GENWMVHDFVV 102 69***************9999834567899****************99.99*********************.9********** PP FAR1 84 eHnHela 90 eHnH l Tp57577_TGAC_v2_mRNA20048 103 EHNHMLH 109 ****996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.5E-18 | 21 | 109 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MQEDWMPKQG MLFDNIDDAW KFWVDYGGRM GFGVRKQYKH ISKDGSGLAT SCRFVCCKEG 60 LRKPDKRDFK TIKPRPETRT NCPARIGLKN MGENWMVHDF VVEHNHMLHT QETTHMLSSQ 120 RKVSEIHCQQ IDLAXXXXXL GIYTP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA20048 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024632821.1 | 5e-64 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2Z6MJF1 | 2e-80 | A0A2Z6MJF1_TRISU; Uncharacterized protein | ||||
STRING | AES87711 | 8e-55 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3045 | 14 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 2e-15 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA20048 |