PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA20046
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family G2-like
Protein Properties Length: 409aa    MW: 46412.7 Da    PI: 8.3966
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA20046genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like33.96.9e-1180110132
                    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPkti 32 
                                k+r  Wt +LH++Fv+av++L G++ A Pk+ 
  Tp57577_TGAC_v2_mRNA20046  80 KARFSWTDDLHQKFVSAVNHL-GIKDAKPKKK 110
                                689******************.9*******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-578113IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-979109IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-880109IPR006447Myb domain, plants
SuperFamilySSF544952.46E-5324352IPR016135Ubiquitin-conjugating enzyme/RWD-like
Gene3DG3DSA:3.10.110.103.9E-6327352IPR016135Ubiquitin-conjugating enzyme/RWD-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MDSISNGACS YWAKPLDENL FKNMWQHVVR QHLVQKESEA KGLKKRGREH LVQMESEAKG  60
LKKRGRDDEV QVSKQPLAKK ARFSWTDDLH QKFVSAVNHL GIKDAKPKKK YKMYLDGVIK  120
NSKMNKKNNE TQAQDQEIDE TEVFFSLTDF FPDLNDYIHN NNYAVSVESI DSPSTSLPQL  180
GQYSMTPPDQ YDDSDIFFNL ADLFPNDEIH NGMWLRPFQL LQSERPVYIG WSEAHCVWWR  240
HTSPALEGNY VGNMIKLGVL NHFVKGGGTN SAATQMAATA KWVVKIQHGR RVSQSERKTT  300
CGLCIRDEAG MFVRAEVGTR PTCRNQKCAP HDNNIMLWNA VIFGPDDTPW NGCSKQNVGK  360
LAKDGVDEMG ARLAQEICYI GVINFKPSLV KCASLVWHQY WSCGSYKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA20046
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.13e-10response regulator 12