PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA20011
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HB-other
Protein Properties Length: 546aa    MW: 61342.6 Da    PI: 6.7754
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA20011genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.34.6e-172175357
                               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                               kR   t+ ql+ Le+++ +++yp++e +  +A++l+Lte+qV+ WF+ rR k+k+
  Tp57577_TGAC_v2_mRNA20011 21 KRKLKTPAQLKGLEKFYTEHKYPTEELKLAIAEELDLTEKQVSGWFCHRRLKDKR 75
                               78999************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-19375IPR009057Homeodomain-like
SuperFamilySSF466899.84E-161578IPR009057Homeodomain-like
PROSITE profilePS5007115.8561676IPR001356Homeobox domain
SMARTSM003892.6E-161880IPR001356Homeobox domain
PfamPF000461.1E-142175IPR001356Homeobox domain
CDDcd000861.60E-142175No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MEESGELQPE ENKASGEKNP KRKLKTPAQL KGLEKFYTEH KYPTEELKLA IAEELDLTEK  60
QVSGWFCHRR LKDKRLLKEE ANAAANGRQD RSSGVIQDRG SGLGQDSCGS SKHGDYKYLD  120
PKEVESHDLY NRDLSVADMT YGRRNHFSEN VSGMDDTSSE SSSFLQDRLY PQGQDPYETE  180
PSRYLAHSKA LPPLNPKGTV NMGYKPSGYL KVKGEIEHAA ITAVKKQLGR NYREDGPLLG  240
VEFDPLPPGA FECQTEDPVH EPYSIADPAL LNSPEISTVK RRPGLSSRYD SYYTKHSSQD  300
NHMEGDDFGS LHDSDVHDKQ DKKAFHGTKH RQAFQSNAAR LPGRNSSLDL YEDSTGEAAY  360
NIAKNHRKDI KRGVEGMRSD SASNHSDHYE ENLAVKHADF DYDNIKPKNV QRSVPADFLQ  420
HDYDKINPKN AQRSEHVKSK PSNSIRNSRG SVDTEERGLS SRMAKEEMFK GDKKAKKQYR  480
DASGAGMLSN ETMVTKRLKP NSFQPYIMKQ LPVAEIEPRK NQRSAAEMPS SFSEDETADT  540
SSSLD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11925PKRKLKT
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA20011
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1466920.0AC146692.14 Medicago truncatula clone mth2-7n20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004491248.10.0homeobox-DDT domain protein RLT2
TrEMBLA0A2K3P3Y30.0A0A2K3P3Y3_TRIPR; Uncharacterized protein
STRINGXP_004491248.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57923051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.11e-87HB-other family protein