PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA19884
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 772aa    MW: 86458.1 Da    PI: 6.8535
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA19884genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS174.39.2e-542914542167
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalkl 83 
                                 +lL+ c++a+ s++ +++++++a+l +lasp+g+ + R+ ay+teALa r++r +++++++ +++++ ++    +e ++al+l
  Tp57577_TGAC_v2_mRNA19884 291 LSLLTGCVDAIGSRNVAAINHFIAKLGDLASPRGTCISRICAYYTEALAIRVTRLWPHVFQITATTRDFDRVvdDDEMITALRL 374
                                689*********************************************************9997666655544688899999** PP

                       GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLak 167
                                +++v+Pi+kf h+t N+++l+a+eg+ervHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTgvg+    sk+el+etg+rLa 
  Tp57577_TGAC_v2_mRNA19884 375 LNQVTPIPKFLHFTSNEMLLRAFEGKERVHIIDFDIKQGLQWPSLFQSLASRTNPPSHVRITGVGE----SKQELNETGDRLAG 454
                                ******************************************************************....************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098526.618264453IPR005202Transcription factor GRAS
PfamPF035143.2E-51291454IPR005202Transcription factor GRAS
SuperFamilySSF813836.38E-10498565IPR001810F-box domain
Gene3DG3DSA:1.20.1280.502.9E-5501549No hitNo description
PROSITE profilePS501819.153504550IPR001810F-box domain
PfamPF142991.7E-36602760IPR025886Phloem protein 2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 772 aa     Download sequence    Send to blast
MLAGCSSSTL LSPTHRLRSE ASAQFQACHF QLPSMSTQRL DLPCSFPRKD GSSRSQQTLR  60
PVGVSVEKSE VKNSNNSSST CSLQQNIRLP PLATTAQTLA EVKDEEFWEK GGKSLKRLAE  120
HGSLDESFTN RVKRKKGNSG DENFDEFERE SFSLAQFGAG NFWSVHGFGG FNSPSLPFSL  180
NCSGDEERVC FAPAEVVSAP LPLSNNPWLE SAVTKITNFG EGSHQHQHHH VNEGSVSNGS  240
SESQSLSLRL NENASEHEDG NGSGNPYQHE GTEVETGEED EEEEHRGFEL LSLLTGCVDA  300
IGSRNVAAIN HFIAKLGDLA SPRGTCISRI CAYYTEALAI RVTRLWPHVF QITATTRDFD  360
RVVDDDEMIT ALRLLNQVTP IPKFLHFTSN EMLLRAFEGK ERVHIIDFDI KQGLQWPSLF  420
QSLASRTNPP SHVRITGVGE SKQELNETGD RLAGGIQRMR RCIIYTTQDT LHRTEQQHST  480
PIPATRSSEL MGIRFSISSS QPSKPSLGEL PESCVAVIME YMDPPQICKL ASLNRAFRAA  540
SSADFVWESK LPPNYHLIIR KIFDVSFPSH LEKRGIYSRL CSLNTFDGGT KKVWLDRSMG  600
KLCLSISAKG LSITYIDDRR YWNHIPTEES TFSSVAYLQQ IWWFEVDGEV EFPFPAGTYS  660
LFFRIHLGKA SKRFGRRVCN TEHVHGWDIK PVRFQLWTSD GQYVASQCFL KGPGKWRYYH  720
AGDFVVEDGN VSTKVKFSMT QIDCTHTKGG LCLDSVFVYP SEFRKVKEFL N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-312734536180Protein SCARECROW
5b3h_A8e-312734535179Protein SCARECROW
5b3h_D8e-312734535179Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA19884
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1411870.0BT141187.1 Medicago truncatula clone JCVI-FLMt-13O18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024638226.10.0scarecrow-like protein 28
SwissprotQ9CAN31e-128SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A2K3PC150.0A0A2K3PC15_TRIPR; SCARECROW-like protein 28-like
STRINGXP_004515801.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91613244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-119GRAS family protein