PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1983
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 596aa    MW: 65174.9 Da    PI: 7.3794
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1983genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.6e-31241298260
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                               dDgynWrKYGqK vkg efprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Tp57577_TGAC_v2_mRNA1983 241 DDGYNWRKYGQKLVKGCEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIVYKGTHDHPK 298
                               8****************************************.***************85 PP
2WRKY106.21.7e-33412470159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Tp57577_TGAC_v2_mRNA1983 412 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 470
                               59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.342235299IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-26236299IPR003657WRKY domain
SuperFamilySSF1182903.66E-24239299IPR003657WRKY domain
SMARTSM007744.5E-33240298IPR003657WRKY domain
PfamPF031065.7E-24241297IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-37397472IPR003657WRKY domain
SuperFamilySSF1182902.35E-29404472IPR003657WRKY domain
PROSITE profilePS5081138.825407472IPR003657WRKY domain
SMARTSM007743.1E-39412471IPR003657WRKY domain
PfamPF031063.6E-26413470IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MDAGEPQFRR QASGEMEHDH EDPNRTGSRP DSASDGATTS ANTSGARYKL MSPAKLPISR  60
SPVLTIPPGL SPTSFLESPV LLSNMKVEPS PTTGSLPRLQ QIGHGFITSS ASATLPVTSG  120
RFNSNTVDDG KYSFFEFKPH GRSNMVPVDF HNHACEKPAQ IDGQGKVQSF VSPLVKREIT  180
APSDEISLSS SPVQMVSSGA SAHAEANLDE LNPSGNIPTG LQASQVDGRG SGQVAADKAS  240
DDGYNWRKYG QKLVKGCEFP RSYYKCTHPN CEVKKLFERS HDGQITEIVY KGTHDHPKPQ  300
PSRRYSGGNV MSVQEDRSDR ASLTSRDDKG FNNYGQMSHA AERDSTPELS PIATNADSPE  360
GAGFLSNRSN DEVDEDDPFS KRRKMDLDIT PVVKPIREPR VVVQTLSEVD ILDDGYRWRK  420
YGQKVVRGNP NPRSYYKCTN AGCPVRKHVE RASHDPKAVI TTYEGKHNHD VPTARNNSHD  480
MAGPSAAGGH TRIRREESDT ISLDLGMGLS PRTAENRSNN QGRMMLTEYG ENQTHNHNSN  540
SSFKFVHNTP PPVYFGVLNN NSNPYGSREN PSDNSSLNHS AYPCPPNMGR ILMGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36241472877Probable WRKY transcription factor 4
2lex_A1e-36241472877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1983
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003600259.10.0probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLG7J2090.0G7J209_MEDTR; Putative transcription factor WRKY family
STRINGAES705100.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39463463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein