PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA19797
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 208aa    MW: 23583 Da    PI: 5.6042
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA19797genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.45.1e-11116160347
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                +WT+ E+  ++++ k  G+g Wk I++    +Rt+ q+ s+ qky
  Tp57577_TGAC_v2_mRNA19797 116 PWTPKEHMAFLEGLKAVGKGKWKPISKNYVITRTPTQVASHAQKY 160
                                7*****************************89************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.2E-10108163IPR009057Homeodomain-like
PROSITE profilePS5129415.686109165IPR017930Myb domain
SuperFamilySSF466897.9E-15111163IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-14112163IPR006447Myb domain, plants
SMARTSM007173.4E-7113163IPR001005SANT/Myb domain
PfamPF002491.2E-9116160IPR001005SANT/Myb domain
CDDcd001678.28E-7116161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MRNDPTTYDS NKYDDNGERI VMLFGVNIGK KLTKVHITPK DSSSMVNNIP HDNKDISIVE  60
HKNEDENENN EVSKHENMER EYEQLSESDN DNDNNEDPNM DIGQIANHDE KKKVIPWTPK  120
EHMAFLEGLK AVGKGKWKPI SKNYVITRTP TQVASHAQKY FQRSEIDPMF RNKRQSIFDM  180
KLDDECENSK ASGGSSSLGP SSASNSH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA19797
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z6MI182e-51A0A2Z6MI18_TRISU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1686178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.12e-23MYB_related family protein