PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA19678 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 152aa MW: 17945.1 Da PI: 7.9533 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 29.1 | 3.3e-09 | 63 | 105 | 1 | 44 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreee 44 +fY+ YA+ GF vrk+ k+ r+++i++r++ C+k g+++ + Tp57577_TGAC_v2_mRNA19678 63 SFYKLYAHFHGFAVRKDDVKRD-REKKIYMRQLLCNKAGTSTGN 105 5*****************9998.5666************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.0E-7 | 63 | 106 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MSTYSETTVR LECDTDDEVE INSGNDFCSQ QGNENSNDYK CISDLTDDDI RGMEFSTETE 60 ATSFYKLYAH FHGFAVRKDD VKRDREKKIY MRQLLCNKAG TSTGNSIREA FTRHILTPFY 120 MREHKVYLDI PRLRLRWRRW SVRQIIASYR K* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA19678 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020209499.1 | 3e-17 | protein FAR1-RELATED SEQUENCE 5-like, partial | ||||
TrEMBL | A0A2K3LQE0 | 4e-65 | A0A2K3LQE0_TRIPR; Uncharacterized protein | ||||
STRING | AES71679 | 4e-28 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9653 | 6 | 34 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA19678 |