PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA19678
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 152aa    MW: 17945.1 Da    PI: 7.9533
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA19678genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR129.13.3e-0963105144
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreee 44 
                                +fY+ YA+  GF vrk+  k+  r+++i++r++ C+k g+++ +
  Tp57577_TGAC_v2_mRNA19678  63 SFYKLYAHFHGFAVRKDDVKRD-REKKIYMRQLLCNKAGTSTGN 105
                                5*****************9998.5666************98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.0E-763106IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MSTYSETTVR LECDTDDEVE INSGNDFCSQ QGNENSNDYK CISDLTDDDI RGMEFSTETE  60
ATSFYKLYAH FHGFAVRKDD VKRDREKKIY MRQLLCNKAG TSTGNSIREA FTRHILTPFY  120
MREHKVYLDI PRLRLRWRRW SVRQIIASYR K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA19678
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020209499.13e-17protein FAR1-RELATED SEQUENCE 5-like, partial
TrEMBLA0A2K3LQE04e-65A0A2K3LQE0_TRIPR; Uncharacterized protein
STRINGAES716794e-28(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9653634