PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1962
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 549aa    MW: 62114.8 Da    PI: 4.9492
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1962genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS432.24.1e-1321785481374
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                               l+e L++cA+av+++d e +++++++l++++s  g+p++Rl ay++eAL +++a+s+s++yk+l++se +     e l+++++++
  Tp57577_TGAC_v2_mRNA1962 178 LKEMLYTCAKAVDENDIETIEWMVTELRKIVSIMGNPVERLGAYMLEALVSKMASSGSTIYKSLKCSEPT---GNELLSYMHVLY 259
                               5789*****************************************************************9...99********** PP

                      GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168
                               e++P++kf+++ aN aI ea+++e++vHiiDf+i+qG+QW++L+qaLa Rp+gpp++RiTgv+++ s   +   +  +g rL+ +
  Tp57577_TGAC_v2_mRNA1962 260 EICPYFKFGYMSANGAIAEAMKEEREVHIIDFQITQGTQWVSLIQALARRPGGPPKIRITGVDDSYSAyaRGGGVDIVGGRLSTL 344
                               ****************************************************************877788999************ PP

                      GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                               A++++vpfefn+ v    ++++le++++++gEa+aVn++l+lh+++desv+++++rd++L+l k++sPkvv++veqe ++n+++F
  Tp57577_TGAC_v2_mRNA1962 345 AQSCHVPFEFNA-VRVPASEVQLEDFELRHGEAVAVNFALMLHHVPDESVNIHNHRDRLLRLAKHISPKVVTLVEQEFNTNNAPF 428
                               ************.7999******************************************************************** PP

                      GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                               lerf+e+++y sa+++s++  lpr+++eri+vE+++l+re+vn+vaceg+er+erhe ++kWr+r+ +aGF+p+pls+++++++k
  Tp57577_TGAC_v2_mRNA1962 429 LERFVETMNYNSAVYESIDLVLPRDHKERINVEQHCLAREVVNLVACEGEERVERHEPMSKWRMRFAKAGFTPYPLSSFINSSIK 513
                               ************************************************************************************* PP

                      GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                ll  + ++ y++ee++g+l+lgWk++ Lv+ +aWr
  Tp57577_TGAC_v2_mRNA1962 514 DLLDSYRGH-YTLEERDGALYLGWKNQVLVASCAWR 548
                               *******77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.668152529IPR005202Transcription factor GRAS
PfamPF035141.4E-129178548IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MQTSQKHEIS YGSGRFYVEP VQNLDSYGLP SSENLENYSS SDNSSQTFYP SHQILEPYGT  60
FESASTSNNS FPYQNSPSTL SFSPNNSPVS QLESNSYVLR PQHSLEFVNG PPEDDDSYLR  120
HDLDDLRHKM LELESVMLGP NADMLDTYDA EVKQESASFL LESEKWKKNM EMVSKGDLKE  180
MLYTCAKAVD ENDIETIEWM VTELRKIVSI MGNPVERLGA YMLEALVSKM ASSGSTIYKS  240
LKCSEPTGNE LLSYMHVLYE ICPYFKFGYM SANGAIAEAM KEEREVHIID FQITQGTQWV  300
SLIQALARRP GGPPKIRITG VDDSYSAYAR GGGVDIVGGR LSTLAQSCHV PFEFNAVRVP  360
ASEVQLEDFE LRHGEAVAVN FALMLHHVPD ESVNIHNHRD RLLRLAKHIS PKVVTLVEQE  420
FNTNNAPFLE RFVETMNYNS AVYESIDLVL PRDHKERINV EQHCLAREVV NLVACEGEER  480
VERHEPMSKW RMRFAKAGFT PYPLSSFINS SIKDLLDSYR GHYTLEERDG ALYLGWKNQV  540
LVASCAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-611825488375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1962
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004506678.10.0scarecrow-like protein 21
RefseqXP_004506679.10.0scarecrow-like protein 21
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A2K3P6Q80.0A0A2K3P6Q8_TRIPR; SCARECROW-like protein transcription factor PAT1-like protein
STRINGXP_004506678.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]