PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA19487

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bZIP

Protein Properties

Length: 438aa MW: 47528.3 Da PI: 6.5136

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA19487	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.5	1.9e-10	223	281	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ + l se+ Tp57577_TGAC_v2_mRNA19487 223 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTSGLNSEN 281 9***********************************************99999888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.7E-15	219	283	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.99	221	284	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.25E-11	223	274	No hit	No description
Gene3D	G3DSA:1.20.5.170	8.5E-11	223	279	No hit	No description
Pfam	PF00170	2.0E-9	223	281	IPR004827	Basic-leucine zipper domain
CDD	cd14703	3.58E-26	224	273	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MEKDKSLGLG GGFPPPSGRY SGYSLPGSGF NVKSESSSGA YPLPVPGTSS DSSGFSHDIS 60 RMSDNPPRNR GHRRAHSEIL TLPDDISFDS DLGVVGGADG PSFSDDTEED LLSMYLDMDK 120 FNSSSATSTF QMGEGSNAAA ASGSAPMSVG KASGAGTSSG ENIASGTTNE RPRIRHQHSQ 180 SMDGSTTIKP EMLVSGSDDM SAADSKKAMS AAKLAELALI DPKRAKRIWA NRQSAARSKE 240 RKMRYIAELE RKVQTLQTEA TSLSAQLTLL QRDTSGLNSE NSELKLRLQT MEQQVHLQDA 300 LNDALKEEIQ HLKVLTGQAI PPNGGPMMNF ASFGGGQQFY PNNNHAMHTL LAAQQFQHLQ 360 IHPQKQQQQP HHQFQQQIQQ QQQQQIQQQQ MQQQQQEQQQ HQQQQQQSGD LKMRATTPPC 420 PNDNPSSDAN PSAAKDC*

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MEKDKSLGLG GGFPPPSGRY SGYSLPGSGF NVKSESSSGA YPLPVPGTSS DSSGFSHDIS  60
RMSDNPPRNR GHRRAHSEIL TLPDDISFDS DLGVVGGADG PSFSDDTEED LLSMYLDMDK  120
FNSSSATSTF QMGEGSNAAA ASGSAPMSVG KASGAGTSSG ENIASGTTNE RPRIRHQHSQ  180
SMDGSTTIKP EMLVSGSDDM SAADSKKAMS AAKLAELALI DPKRAKRIWA NRQSAARSKE  240
RKMRYIAELE RKVQTLQTEA TSLSAQLTLL QRDTSGLNSE NSELKLRLQT MEQQVHLQDA  300
LNDALKEEIQ HLKVLTGQAI PPNGGPMMNF ASFGGGQQFY PNNNHAMHTL LAAQQFQHLQ  360
IHPQKQQQQP HHQFQQQIQQ QQQQQIQQQQ MQQQQQEQQQ HQQQQQQSGD LKMRATTPPC  420
PNDNPSSDAN PSAAKDC*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA19487

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	5e-67	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003597529.1	0.0	probable transcription factor PosF21
Swissprot	Q04088	1e-150	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A2Z6LS22	0.0	A0A2Z6LS22_TRISU; Uncharacterized protein
STRING	AES67780	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5517	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-138	bZIP family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA19487

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]