PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA19466
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 455aa    MW: 51694.5 Da    PI: 8.2014
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA19466genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS163.12.3e-50231702151
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                ++lL+ecA++v+sg+ ++a+  L+ +s+++sp+g+++qR+++yf eAL  +++++ +++ykal++s+ts   ss+ + ++++f+
  Tp57577_TGAC_v2_mRNA19466  23 ISLLIECAKCVASGSIKNADIGLEYISQISSPYGSAVQRVVTYFSEALGYKIVQHLPGVYKALNSSKTS--LSSDDILVQRYFY 104
                                579*************************************************************99998..79*********** PP

                       GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspe 151
                                +++P+lkfs+l++NqaI+e++e+e+ vHiiD+  s+++QW++L+q+L +R +gpp+l+iTg++ ++
  Tp57577_TGAC_v2_mRNA19466 105 DLCPFLKFSYLITNQAIVESMESEKVVHIIDLHCSEPAQWINLIQTLKKRHGGPPHLKITGIHVKK 170
                                **************************************************************9855 PP
2GRAS112.36.2e-35172370134302
                       GRAS 134 sRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll... 214
                                +R +gpp+l+iTg+++    +ke l ++   L+   ++l+ p++fn+  +++l+d+++e+L vk+g+a+   ++          
  Tp57577_TGAC_v2_mRNA19466 172 KRHGGPPHLKITGIHE----KKEVLDQMSFHLTTEPRKLDFPLQFNP-FVSKLKDVDFENLPVKTGDAVETTSISPAGPSSinl 250
                                699*************....9**************************.6999*************8888776665444444578 PP

                       GRAS 215 ....................................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                                                                      s ++      +L+++++l+Pk++v++eqe+++n+ ++++r+ +al+
  Tp57577_TGAC_v2_mRNA19466 251 qragqmgqrtfaewlerdminayilspdsalsplflGASPKMGI----FLNAMRNLKPKLLVITEQESNLNGCNLMDRIDRALY 330
                                8999************************9999888877777777....************************************ PP

                       GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvaceg 302
                                +y++lfd+l++++ r+s er k+E +llg++i+n ++ce+
  Tp57577_TGAC_v2_mRNA19466 331 FYTSLFDCLDSTVTRTSVERLKLESMLLGEQIKNTITCEE 370
                                **************************************97 PP
3GRAS92.56.4e-29370450292373
                       GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                ++i+n+++ceg +r+erhe++ekW +rle+aGF++vpls++   +a +ll++++ + y+ +ee+++l+++W+drpL+svSaW
  Tp57577_TGAC_v2_mRNA19466 370 EQIKNIITCEGVDRKERHEKVEKWIRRLEMAGFEKVPLSYNGRIEATSLLQRYSHK-YKFKEENDCLLICWSDRPLFSVSAW 450
                                79****************************************************77.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.7931432IPR005202Transcription factor GRAS
PfamPF035147.8E-4823170IPR005202Transcription factor GRAS
PfamPF035142.1E-32172370IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MDSGSPYQWL RELRCDSNSS NPISLLIECA KCVASGSIKN ADIGLEYISQ ISSPYGSAVQ  60
RVVTYFSEAL GYKIVQHLPG VYKALNSSKT SLSSDDILVQ RYFYDLCPFL KFSYLITNQA  120
IVESMESEKV VHIIDLHCSE PAQWINLIQT LKKRHGGPPH LKITGIHVKK EKRHGGPPHL  180
KITGIHEKKE VLDQMSFHLT TEPRKLDFPL QFNPFVSKLK DVDFENLPVK TGDAVETTSI  240
SPAGPSSINL QRAGQMGQRT FAEWLERDMI NAYILSPDSA LSPLFLGASP KMGIFLNAMR  300
NLKPKLLVIT EQESNLNGCN LMDRIDRALY FYTSLFDCLD STVTRTSVER LKLESMLLGE  360
QIKNTITCEE QIKNIITCEG VDRKERHEKV EKWIRRLEMA GFEKVPLSYN GRIEATSLLQ  420
RYSHKYKFKE ENDCLLICWS DRPLFSVSAW SFRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-5054531380Protein SCARECROW
5b3h_D2e-5054531380Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA19466
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT9673041e-172CT967304.5 M.truncatula DNA sequence from clone MTH2-36C8 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004513385.10.0scarecrow-like protein 3
TrEMBLA0A2Z6MW560.0A0A2Z6MW56_TRISU; Uncharacterized protein
STRINGXP_004513385.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145191017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-133scarecrow-like 3