PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA19453 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | GRAS | ||||||||
Protein Properties | Length: 166aa MW: 18723.7 Da PI: 6.5026 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 153.2 | 2.5e-47 | 8 | 156 | 65 | 220 |
GRAS 65 ppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvg 148 ++s+t + ss+ + ++k+f+e++P+lkfs+l++Nq I+e++e e+ vHiiD+ s+++QW++L+q++ +R +gpp+++iTg++ Tp57577_TGAC_v2_mRNA19453 8 NSSKT--SLSSDDMLVQKYFYELCPFLKFSYLITNQSIVESMECEKVVHIIDLHCSEPAQWINLIQTIKKRHGGPPHIKITGIH 89 33333..3599999********************************************************************** PP GRAS 149 spesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsl 220 + +ke l ++ L+ A++l+ p++fn+ ++++led+++e+L vk+g+a+a+ ++lqlh+ll+ + ++ Tp57577_TGAC_v2_mRNA19453 90 A----KKEVLDQMSFHLTTEARNLDFPLQFNP-IVSKLEDVDFENLPVKTGDAVAITSALQLHSLLATDDKM 156 *....9**************************.7999****************************9877655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 25.395 | 1 | 165 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.3E-45 | 8 | 156 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
LLHFSSLNSS KTSLSSDDML VQKYFYELCP FLKFSYLITN QSIVESMECE KVVHIIDLHC 60 SEPAQWINLI QTIKKRHGGP PHIKITGIHA KKEVLDQMSF HLTTEARNLD FPLQFNPIVS 120 KLEDVDFENL PVKTGDAVAI TSALQLHSLL ATDDKMFKLS IYVSC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-22 | 23 | 140 | 100 | 217 | Protein SCARECROW |
5b3h_A | 4e-22 | 23 | 140 | 99 | 216 | Protein SCARECROW |
5b3h_D | 4e-22 | 23 | 140 | 99 | 216 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA19453 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT967304 | 1e-155 | CT967304.5 M.truncatula DNA sequence from clone MTH2-36C8 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004513385.1 | 8e-91 | scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 6e-53 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A2Z6MW56 | 3e-98 | A0A2Z6MW56_TRISU; Uncharacterized protein | ||||
STRING | XP_004513385.1 | 3e-90 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 8e-53 | scarecrow-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA19453 |
Publications ? help Back to Top | |||
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