PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA19396 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | WRKY | ||||||||
Protein Properties | Length: 141aa MW: 16333.1 Da PI: 8.0078 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 26.4 | 1.4e-08 | 118 | 139 | 1 | 22 |
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 +dDgy+WrKYG+K vk++ + r Tp57577_TGAC_v2_mRNA19396 118 MDDGYKWRKYGKKIVKNNLNLR 139 69***************97755 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.1E-10 | 105 | 139 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.36E-8 | 110 | 139 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 11.187 | 113 | 140 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-5 | 119 | 139 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MDYYFVNSHA TTNFAQSTHH HHHMIPNSSS HEFMQQLSDY LMFDDIHHDQ ESRTQSIESL 60 EKVTSQSTNE SLEKVTFSDA SQGFNDATSK SNNIQKKGIK REVGPKIAFR TKSEIEIMDD 120 GYKWRKYGKK IVKNNLNLRY * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA19396 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003630118.1 | 6e-52 | probable WRKY transcription factor 51 | ||||
TrEMBL | A0A072TVK6 | 3e-51 | A0A072TVK6_MEDTR; WRKY family transcription factor | ||||
STRING | AET04594 | 2e-51 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1120 | 34 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64810.1 | 6e-17 | WRKY DNA-binding protein 51 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA19396 |