PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA19351
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family G2-like
Protein Properties Length: 370aa    MW: 41018.4 Da    PI: 7.1028
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA19351genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.33e-32213268156
                    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                                k+r++W+++LH+rF++a++qLGG++ AtPk+i+elm+v+gLt+++vkSHLQkYRl+
  Tp57577_TGAC_v2_mRNA19351 213 KQRRCWSQDLHKRFLQALQQLGGADSATPKQIRELMNVDGLTNDEVKSHLQKYRLH 268
                                79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.921210270IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-29211271IPR009057Homeodomain-like
SuperFamilySSF466892.15E-18211271IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-28213268IPR006447Myb domain, plants
PfamPF002491.1E-7215266IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MQRFKMGFSD YIQALEEERR KIQVFPKELP LSLELVTQAI DACRQQLSGT TTEYNLNGQQ  60
SECSEQTTST DGPVLEEFIP IKKRASPYCE QVYDVDDEED DEQHSHHKQQ KISMDKKKSD  120
WLRSVQLWNP DPPSHEDVTR KVVPVMELKR NGSGGGAFHP FQKEERVNNR TCELLSKGQP  180
SSTGVAAVSS NAATVTSNNA ANSKRDEKEE KRKQRRCWSQ DLHKRFLQAL QQLGGADSAT  240
PKQIRELMNV DGLTNDEVKS HLQKYRLHTR RPSPSTNESA NSQSTAPFVL VGNIFVQQQE  300
YGGVASSTTS GEMTKVVAPS GIYAPVATHP PPAATIKKPE FNNSEGAVHS NSPTSSSSTH  360
NTTNTSLGY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA19351
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1400271e-101AC140027.11 Medicago truncatula clone mth2-5m21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591795.20.0transcription factor HHO2
TrEMBLA0A2K3KZJ10.0A0A2K3KZJ1_TRIPR; Two-component response regulator ARR2
STRINGXP_007143802.11e-165(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39183363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.13e-64G2-like family protein