PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA19348
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 449aa    MW: 51142 Da    PI: 9.28
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA19348genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3444e-143203644892
                                EEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                         B3  48 vkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                                ++++y+++s++yvltkGW++Fvk+++L++gD v F ++   +++l
  Tp57577_TGAC_v2_mRNA19348 320 FRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDAVRFFRSTGPDRQL 364
                                99*******************************998664455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-16319374IPR015300DNA-binding pseudobarrel domain
PfamPF023626.3E-11319362IPR003340B3 DNA binding domain
SuperFamilySSF1019362.09E-12319370IPR015300DNA-binding pseudobarrel domain
CDDcd100179.23E-10320357No hitNo description
PROSITE profilePS508638.501320372IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MELAGSCTDE TTTTTITTSN DSLSVSLIPA KLSPPPTNAL SRVGSGASVV VDPEICGXXX  60
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  240
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXXXXXXXXF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD AVRFFRSTGP  360
DRQLYIDCKA RSSSVVGVGE VDSNKTGGLF ISVRPVVEPV QMVRLFGVNL LKLPGSDGTV  420
GGSCNGKRKE MEFFALECTK KPKIIGAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-2232037466120DNA-binding protein RAV1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1426442KRKEMEFFALECTKKPK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA19348
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.13e-30RAV family protein