PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA19311
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 556aa    MW: 62671.9 Da    PI: 6.7973
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA19311genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.45.3e-32233290260
                                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                +DgynWrKYGqK+vkgse+prsYY+Ct+ +C++kkkve++  d++++ei+Y+g+Hnh+k
  Tp57577_TGAC_v2_mRNA19311 233 EDGYNWRKYGQKQVKGSENPRSYYKCTHLNCSMKKKVEKDL-DGQITEIVYKGTHNHPK 290
                                7****************************************.***************85 PP
2WRKY100.41.1e-31391449159
                                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                ldDg++WrKYGqK+vkg++++rsYY+Ct +gC+v+k+ver+a+d k+v++tYeg+Hnh+
  Tp57577_TGAC_v2_mRNA19311 391 LDDGFRWRKYGQKVVKGNPNARSYYKCTAHGCTVRKHVERAAHDIKAVITTYEGKHNHD 449
                                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-27221291IPR003657WRKY domain
PROSITE profilePS5081122.607227291IPR003657WRKY domain
SuperFamilySSF1182902.75E-24228291IPR003657WRKY domain
SMARTSM007742.7E-34232290IPR003657WRKY domain
PfamPF031061.3E-24233289IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-35376451IPR003657WRKY domain
SuperFamilySSF1182901.44E-27383451IPR003657WRKY domain
PROSITE profilePS5081136.575386451IPR003657WRKY domain
SMARTSM007743.4E-36391450IPR003657WRKY domain
PfamPF031068.3E-24392449IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MTMDEQQHHH HHSNWDTSEL NNNINNNNNN NHNHNHSLNH LVEFNDVPKF KSVQPPSLPL  60
SQSPSFHLPF SSTFSPSDFL ISPFFLSSPN VFASPTTEAF ANQSFNWNKN SLEEEEQQQG  120
DKKDEKNYSD FSFPTQTKPE SVLQSSSDMF QLQEQAKKQN IWKFNEPTNQ NDILSERTVS  180
ESEFQPTQNF SSELALIKPE THNSSVNGSG YYNYNNNNYN NASQSVREQR RSEDGYNWRK  240
YGQKQVKGSE NPRSYYKCTH LNCSMKKKVE KDLDGQITEI VYKGTHNHPK PQSNRRTSSQ  300
PSSSCTNSGI SDQSVMDHVS IQEDSSASVG EEEFEQTSQT SYSGGGNDDA NGPEAKRWKG  360
DNENDVYSAS ASRTVKEPRV VVQTTSEIDI LDDGFRWRKY GQKVVKGNPN ARSYYKCTAH  420
GCTVRKHVER AAHDIKAVIT TYEGKHNHDV PAARGSAGYN MNRNSMNNAI VPAPIRPSAV  480
NCYSNSSSFT NSFYNKTGLP TNGNQESFRP AMLQGNGNFG YSSANHSQYS DAGYLKAKDE  540
RKDDSFLQSF LSKDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-33224452878Probable WRKY transcription factor 4
2lex_A3e-33224452878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA19311
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024625868.10.0LOW QUALITY PROTEIN: probable WRKY transcription factor 26
SwissprotQ6B6R41e-117WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A2K3PAJ40.0A0A2K3PAJ4_TRIPR; WRKY transcription factor
STRINGAES796790.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-103WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]