PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA193 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 172aa MW: 20437.9 Da PI: 10.087 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 62.7 | 1.1e-19 | 77 | 168 | 1 | 88 |
FAR1 1 kfYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkle 82 +fY +Y+k GF +rk+ +++ k ++ i++++fvC+k+g+r++ + +++r++r trt+C a+l+v +k ++k++v+ +e Tp57577_TGAC_v2_mRNA193 77 EFYYQYGKCKGFAIRKRDVRRRgpKGSEIIVMNEFVCNKHGSRNKMHLIrVDRKREHRRLTRTECGARLRVLYKKnKDKYVVSLFE 162 6******************99998999999************999876657889999**************999889********* PP FAR1 83 leHnHe 88 + HnHe Tp57577_TGAC_v2_mRNA193 163 ETHNHE 168 *****8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.0E-17 | 77 | 169 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MHLQKLMPNI IVVKIVRMEM VMLYRLQIKV QMMKIAHNDD DEDAFQATAG DKFLMVDSMT 60 VEEIRALEFV NVAEAYEFYY QYGKCKGFAI RKRDVRRRGP KGSEIIVMNE FVCNKHGSRN 120 KMHLIRVDRK REHRRLTRTE CGARLRVLYK KNKDKYVVSL FEETHNHEST PP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA193 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024631935.1 | 4e-46 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
TrEMBL | A0A2K3LXK3 | 2e-50 | A0A2K3LXK3_TRIPR; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3290 | 7 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 3e-11 | far-red elongated hypocotyls 3 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA193 |